Showing : SNP • reset
0
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3
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687
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How to getting synonymous SNPs from BiomaRt before timing out?
biomaRt SNP
updated 12 months ago by 65k • written 13 months ago by • 0
0
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0
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468
views
Human to mouse SNP conversion
liftOver SNP GWASTools
13 months ago bonheur • 0
0
votes
4
replies
732
views
Which software can prune 5 Million SNPs?
LinkageDisequilibrium SNP gwas GWASdata ldblock
13 months ago Weiqiong • 0
0
votes
1
reply
858
views
How to remove INDELS/SNPs from a bed file
SNP
updated 17 months ago by 65k • written 17 months ago by • 0
0
votes
0
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461
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
17 months ago m610110001 • 0
0
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0
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644
views
ACMG Annotations for Variants in R
ACMG SNP
21 months ago hamza_karakurt ▴ 50
0
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2
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2.5k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.1 years ago by • 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.2 years ago by ▴ 870 • written 2.4 years ago by • 0
0
votes
1
reply
797
views
Get CHR & POS for a list of SNP rs ids (>1M)
POS CHR SNP rs
updated 2.5 years ago by 65k • written 2.5 years ago by • 0
0
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0
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828
views
Reading Affymetrix Axiom files
affy SNP axiom
2.9 years ago f.calboli • 0
0
votes
0
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716
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.0 years ago Amber • 0
5
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4
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9.6k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
6
votes
11
replies
1.7k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 3.7 years ago by ★ 6.5k • written 3.7 years ago by • 0
2
votes
2
replies
2.4k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 20
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 4.9 years ago by 21k • written 4.9 years ago by ▴ 160
0
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0
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801
views
genetic and linkage maps construction
genetic map linkage maps SNP assembly GBS
5.2 years ago mictadlo ▴ 10
0
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0
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733
views
R: estimating error rate of replicated samples
R SNP genotyping genetic diversity
5.2 years ago meriam.nef • 0
0
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0
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1.4k
views
How to extract SNPs from multiple alignment fasta file?
snp multiple sequence alignment fasta Tutorial
updated 5.5 years ago by 25k • written 5.5 years ago by • 0
0
votes
1
reply
1.2k
views
Finding/Understanding Affy 6.0 Annotation File
affy affymetrix microarray SNP
5.7 years ago CantExitVIM ▴ 10
0
votes
1
reply
1.8k
views
VCF file non-SNP germline mutations
PureCN VCF SNP
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by ▴ 10
3
votes
5
replies
1.6k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 5.9 years ago by • 0 • written 6.0 years ago by ▴ 10
0
votes
1
reply
1.3k
views
How to draw venn diagram with four CSV files
R SNP venn diagram
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
0
votes
0
replies
813
views
Wtccc sanger dataset
SNP
6.2 years ago hadeel.alzoubi • 0
0
votes
1
reply
1.1k
views
How to map a SNP to all genes within 50kb (upstream or downstream) of the SNP?
annotation R snp
updated 6.7 years ago by 65k • written 6.7 years ago by ▴ 10
0
votes
0
replies
878
views
Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
6.8 years ago Ellen O • 0
2
votes
1
reply
1.2k
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 6.9 years ago by 16k • written 6.9 years ago by ▴ 90
3
votes
4
replies
1.4k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.1 years ago Ramiro Magno ▴ 100
1
vote
2
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3.4k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
7.2 years ago lordbleys • 0
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 7.4 years ago by ★ 6.5k • written 7.4 years ago by ▴ 20
0
votes
2
replies
1.5k
views
injectSNPS only for common variants
snp snplocs
updated 7.4 years ago by ★ 3.2k • written 7.4 years ago by • 0
0
votes
0
replies
1.1k
views
vizualization of mutations
genomes SNP
7.6 years ago Bogdan ▴ 670
0
votes
0
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1.1k
views
Illumina Genotyping in parallel raise an error
crlmm snp illumina
7.8 years ago nadne ▴ 10
1
vote
0
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2.1k
views
Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
7.9 years ago altuna akalin ▴ 20
0
votes
1
reply
1.2k
views
Error with FunciSNP
snp R gwastools
8.0 years ago musomilan • 0
2
votes
3
replies
2.3k
views
ggbio circular plot
ggbio SNP granges
updated 8.3 years ago by ★ 11k • written 8.3 years ago by • 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
8.4 years ago KB ▴ 50
0
votes
1
reply
1.1k
views
Distance measure used by snpgdsPCA in SNPRelate
snp clustering
8.5 years ago mattcott • 0
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 8.5 years ago by ▴ 20 • written 8.6 years ago by • 0
0
votes
0
replies
1.1k
views
News: gwascat package updated: new features in devel branch
GWAS genetic epidemiology SNP News
8.7 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.2k
views
trouble with predictCoding( function
snp variantannotation predict coding
8.8 years ago vakul.mohanty ▴ 10
0
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2
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3.3k
views
Pipeline for analyzing CNV (SNP array) level 3 from TCGA
SNP CNV TCGA
9.0 years ago NS ▴ 60
0
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2
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4.8k
views
biomaRt: SNP no access to grch37.ensembl.org
SNP biomart archive grch37
9.1 years ago mrprao • 0
0
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0
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1.4k
views
DNAcopy default settings and SNP6.0 arrays
SNP DNAcopy SNP6.0 CNV
9.2 years ago giovanni.dario • 0
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
9.4 years ago garrisrg ▴ 10
1
vote
2
replies
1.7k
views
biomaRt error message
biomaRt snp
updated 9.4 years ago by ▴ 800 • written 9.4 years ago by ▴ 10
0
votes
0
replies
1.5k
views
Any R Package To Detect Copy Neutral LOH for SNP 6.0 Array Data
microarray affy snp
9.5 years ago sun ▴ 100
5
votes
5
replies
4.1k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 9.5 years ago by 21k • written 9.5 years ago by ▴ 10
0
votes
0
replies
1.4k
views
ChIPpeakAnno
SNP Annotation annotate convert SNP Annotation annotate convert
9.7 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.4k
views
help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip
SNP VariantAnnotation Annotation probe VariantAnnotation GWASTools SNP VariantAnnotation
updated 9.9 years ago by ▴ 870 • written 9.9 years ago by ▴ 160
0
votes
6
replies
2.5k
views
crlmm : copy number and genotyping of Illumina data
SNP Annotation Normalization crlmm copynumber SNP Annotation Normalization crlmm
updated 9.9 years ago by ▴ 1000 • written 9.9 years ago by ▴ 160
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Comment: flowStats Search Error by SamGG ▴ 350
So do I. The direct URL is https://bioconductor.org/packages/3.18/bioc/html/flowStats.html
Comment: Interaction Terms in DESeq2 - Shrinkage by andrebolerbarros ▴ 20
Thanks for your suggestion! For `apeglm` shrinkage, on that scenario, I would have to relevel the variable and then re-run with `nbinomWal…
Answer: Interaction Terms in DESeq2 - Shrinkage by swbarnes2 ★ 1.3k
I think the simpler way to do it is to make a new column of conc_time_tissue all stuck together, and make that column your design. Then …
Comment: SingleR Label.Ont by lisia • 0
De online casino's bij [One Casino][1] zullen je achterlaten met de mooiste herinneringen. De site geeft je een geweldige kans om een keuze…
Comment: GSVA error by Alex • 0
Thank you, Robert! The update sorted everything out.
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Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var
Comment: Not fully paired differential gene expression analysis
Answer: GSVA error
Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
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