Showing : SNPs • reset
1
vote
2
replies
2.6k
views
Any tool to calculate Fst on haploid data?
snps VCF
updated 23 months ago by • 0 • written 7.2 years ago by ▴ 10
0
votes
1
reply
597
views
Error running hierClust
hierClust R SNPs clustering
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
0
votes
0
replies
830
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.1 years ago pltbiotech_tkarthi • 0
0
votes
0
replies
1.2k
views
vcf to venn diagram
snps vcf venn diagram ggplot2
5.3 years ago mictadlo ▴ 10
0
votes
6
replies
1.2k
views
Physical position to gene positions
bioconductor molecular biology snps
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
2
votes
5
replies
2.5k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 5.8 years ago by ★ 6.8k • written 5.9 years ago by ▴ 830
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc
updated 6.8 years ago by ★ 6.8k • written 6.9 years ago by • 0
0
votes
1
reply
1.4k
views
Extract SNPs and INDELs
hsapiens snps indels
updated 8.4 years ago by 16k • written 8.4 years ago by • 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings SNPs alignment
updated 8.8 years ago by 16k • written 8.8 years ago by ▴ 30
0
votes
4
replies
1.8k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz ideogram snps
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by • 0
4
votes
3
replies
2.1k
views
Overlap the snps
overlap snps granges iranges
updated 9.6 years ago by ★ 11k • written 9.6 years ago by ▴ 10
11 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…
Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Votes
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
United States, 1 minute ago
United States, 3 minutes ago
France, 6 minutes ago
Spain, 29 minutes ago
France/Marseille/Inserm, 50 minutes ago
Traffic: 773 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6