Bioconductor SNPs

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2.5k

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snps VCF

updated 23 months ago by Arafat • 0 • written 7.1 years ago by rkdonthu ▴ 10

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586

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hierClust R SNPs clustering

updated 2.0 years ago by James W. MacDonald 65k • written 2.0 years ago by sekhwal • 0

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818

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SNPs

5.1 years ago pltbiotech_tkarthi • 0

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1.2k

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snps vcf venn diagram ggplot2

5.3 years ago mictadlo ▴ 10

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1.2k

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bioconductor molecular biology snps

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by jebreen20 • 0

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2.5k

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motifbreakR vcf snps motif analysis

updated 5.8 years ago by Valerie Obenchain ★ 6.8k • written 5.8 years ago by svlachavas ▴ 830

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1.4k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by Lna • 0

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1.4k

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hsapiens snps indels

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by kredens • 0

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1.5k

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Biostrings SNPs alignment

updated 8.7 years ago by Hervé Pagès 16k • written 8.8 years ago by ben.ward ▴ 30

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1.8k

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gviz ideogram snps

updated 9.2 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.2 years ago by vnyirongo • 0

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2.1k

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overlap snps granges iranges

updated 9.5 years ago by Michael Lawrence ★ 11k • written 9.5 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Votes

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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