Bioconductor SNPs

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2.6k

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snps VCF

updated 23 months ago by Arafat • 0 • written 7.2 years ago by rkdonthu ▴ 10

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596

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hierClust R SNPs clustering

updated 2.1 years ago by James W. MacDonald 65k • written 2.1 years ago by sekhwal • 0

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827

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SNPs

5.1 years ago pltbiotech_tkarthi • 0

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1.2k

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snps vcf venn diagram ggplot2

5.3 years ago mictadlo ▴ 10

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1.2k

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bioconductor molecular biology snps

updated 5.4 years ago by James W. MacDonald 65k • written 5.4 years ago by jebreen20 • 0

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2.5k

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motifbreakR vcf snps motif analysis

updated 5.8 years ago by Valerie Obenchain ★ 6.8k • written 5.9 years ago by svlachavas ▴ 830

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1.4k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by Lna • 0

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1.4k

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hsapiens snps indels

updated 8.4 years ago by Hervé Pagès 16k • written 8.4 years ago by kredens • 0

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1.5k

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Biostrings SNPs alignment

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by ben.ward ▴ 30

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1.8k

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gviz ideogram snps

updated 9.2 years ago by florian.hahne@novartis.com ★ 1.6k • written 9.2 years ago by vnyirongo • 0

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2.1k

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overlap snps granges iranges

updated 9.6 years ago by Michael Lawrence ★ 11k • written 9.6 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0