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BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt
connection
sql
updated 2.9 years ago by
Joan Miró
▴ 80 • written 2.9 years ago by
Anand
▴ 10
2
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4
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984
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MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI
NCBI
SQL
AnnotationForge
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
chefer
• 0
2
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1.2k
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Job:
Full-time bioinformatics instructor position at Fred Hutch
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6.2 years ago
ematsen
▴ 20
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Job:
Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics
data science
python
SQL
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8.2 years ago
Doe, Aimee
▴ 40
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
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Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
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Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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