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SRAdb
•
reset
7
votes
5
replies
6.1k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.9 years ago by
Sean Davis
21k
0
votes
8
replies
3.4k
views
error in SRAdb
SRAdb
SRAdb
updated 6.6 years ago by
djlemas
• 0 • written 9.8 years ago by
Faryabi, Robert NIH/NCI [F]
▴ 30
1
vote
3
replies
3.3k
views
SRAdb: Error downloading sqlite files
sradb
written 6.5 years ago by
arielle
• 0
0
votes
0
replies
2.2k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
10.9 years ago
Jack Zhu
▴ 170
0
votes
2
replies
2.1k
views
getSRAdbFile cannot open URL
SRAdb
SRAdb
updated 11.6 years ago by
Martin Morgan
25k • written 11.6 years ago by
Nicholas Stong
▴ 10
0
votes
8
replies
2.1k
views
'SRAdb useful for visualizing BAM files'
SRAdb
SRAdb
updated 14.0 years ago by
Jack Zhu
▴ 170 • written 14.0 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
2.0k
views
Error downloading using SRAdb
fastq
sradb
ftp
updated 8.1 years ago by
Jack Zhu
▴ 170 • written 8.1 years ago by
yugi1001
• 0
1
vote
3
replies
2.0k
views
problem with getSRAfile in SRAdb
SRAdb
updated 6.5 years ago by
Jack Zhu
▴ 170 • written 6.5 years ago by
shidaxia
• 0
2
votes
2
replies
1.9k
views
SRAdb: could not find function "sqliteTableFields"
sradb
sqlite
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
dario.beraldi
• 0
0
votes
2
replies
1.8k
views
SRAdb error
SRAdb
SRAdb
updated 12.1 years ago by
Sean Davis
21k • written 12.1 years ago by
Ayten YIGITER
▴ 10
0
votes
1
reply
1.7k
views
Empty SQL query result for SRA run
sradb
7.5 years ago
Thomas Sandmann
▴ 90
0
votes
2
replies
1.6k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
updated 9.9 years ago by
Jack Zhu
▴ 170 • written 9.9 years ago by
Al-Nasir, Jamie 2012
▴ 10
0
votes
0
replies
1.6k
views
Is it possible to get SRA sample attributes for a given sample or experiment ID?
SRAdb
SRAdb
11.1 years ago
Vladimir Morozov
▴ 130
0
votes
0
replies
1.5k
views
Bioconductor Digest, Vol 95, Issue 7
PROcess
SRAdb
PROcess
SRAdb
13.3 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.4k
views
SRAdb listFastq error
SRAdb
SRAdb
updated 13.3 years ago by
Sean Davis
21k • written 13.3 years ago by
Mark Dunning
★ 1.1k
0
votes
2
replies
1.4k
views
SRAdb "outdated" sqlite db
sradb
sqlite
outdated
updated 7.6 years ago by
Sean Davis
21k • written 7.6 years ago by
Nicolas Delhomme
▴ 320
0
votes
0
replies
1.3k
views
Cevap: Re: SRAdb error
SRAdb
SRAdb
12.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
1
reply
1.3k
views
SRAdb: is the database missing some entries? (Ben Woodcroft)
SRAdb
SRAdb
updated 11.8 years ago by
Ben Woodcroft
▴ 40 • written 11.8 years ago by
Jack Zhu
▴ 170
0
votes
1
reply
1.3k
views
Analysis of Next Generation of Sequencing DAta
SRAdb
updated 9.5 years ago by
Sean Davis
21k • written 9.5 years ago by
Jerry Cholo
▴ 190
0
votes
0
replies
1.3k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
9.9 years ago
Hugh Shanahan
▴ 50
2
votes
1
reply
1.3k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
grecoandreauni
• 0
0
votes
0
replies
1.2k
views
SRAdb: differences between the database and the NCBI website
PROcess
SRAdb
PROcess
SRAdb
11.8 years ago
Ben Woodcroft
▴ 40
2
votes
0
replies
1.1k
views
Discrepancies between sradb, sraruninfo
sradb
5.9 years ago
langmea
▴ 20
0
votes
3
replies
1.1k
views
getSRA() from the SRAdb package is returning an empty data.frame from the full SQL file, but not the demo file
SRAdb
getSRA()
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
mac54
• 0
0
votes
0
replies
1.0k
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
3.9 years ago
Aditya
▴ 160
0
votes
2
replies
1.0k
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
20 months ago • updated 19 months ago
jfertaj
▴ 30
0
votes
0
replies
940
views
Query based on PMIDs
SRAdb
geoquery
5.4 years ago
Deepak Tanwar
▴ 10
0
votes
0
replies
654
views
Best straightforward way from SRA-fastq to Phyloseq Object
SRAdb
2.7 years ago
Davide
• 0
28 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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