Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SRAdb
•
reset
1
vote
3
replies
3.9k
views
SRAdb: Error downloading sqlite files
sradb
written 7.5 years ago by
arielle
• 0
7
votes
5
replies
6.9k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 9.9 years ago by
Sean Davis
21k
0
votes
2
replies
1.4k
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
2.6 years ago
jfertaj
▴ 30
0
votes
0
replies
874
views
Best straightforward way from SRA-fastq to Phyloseq Object
SRAdb
3.7 years ago
Davide
• 0
0
votes
3
replies
1.4k
views
getSRA() from the SRAdb package is returning an empty data.frame from the full SQL file, but not the demo file
SRAdb
getSRA()
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
mac54
• 0
0
votes
0
replies
1.3k
views
listSRAfile: Error in if (is.na(sra_acc$run[i])) { : argument is of length zero
SRAdb
4.9 years ago
Aditya
▴ 160
0
votes
0
replies
1.2k
views
Query based on PMIDs
SRAdb
geoquery
6.4 years ago
Deepak Tanwar
▴ 10
2
votes
0
replies
1.4k
views
Discrepancies between sradb, sraruninfo
sradb
6.9 years ago
langmea
▴ 20
1
vote
3
replies
2.3k
views
problem with getSRAfile in SRAdb
SRAdb
updated 7.5 years ago by
Jack Zhu
▴ 170 • written 7.5 years ago by
shidaxia
• 0
0
votes
8
replies
4.0k
views
error in SRAdb
SRAdb
SRAdb
updated 7.6 years ago by
djlemas
• 0 • written 10.8 years ago by
Faryabi, Robert NIH/NCI [F]
▴ 30
2
votes
1
reply
1.6k
views
Uniting SRA Data into a single file
R
fastq
SRA
sradb
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
grecoandreauni
• 0
0
votes
1
reply
2.0k
views
Empty SQL query result for SRA run
sradb
8.5 years ago
Thomas Sandmann
▴ 90
0
votes
2
replies
1.7k
views
SRAdb "outdated" sqlite db
sradb
sqlite
outdated
updated 8.6 years ago by
Sean Davis
21k • written 8.6 years ago by
Nicolas Delhomme
▴ 320
0
votes
1
reply
2.3k
views
Error downloading using SRAdb
fastq
sradb
ftp
updated 9.1 years ago by
Jack Zhu
▴ 170 • written 9.1 years ago by
yugi1001
• 0
2
votes
2
replies
2.2k
views
SRAdb: could not find function "sqliteTableFields"
sradb
sqlite
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
dario.beraldi
• 0
0
votes
1
reply
1.6k
views
Analysis of Next Generation of Sequencing DAta
SRAdb
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
Jerry Cholo
▴ 190
0
votes
0
replies
1.5k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
10.8 years ago
Hugh Shanahan
▴ 50
0
votes
2
replies
1.9k
views
SRAmetadb Bioconductor package; study record count low for 2013
SRAdb
SRAdb
updated 10.9 years ago by
Jack Zhu
▴ 170 • written 10.9 years ago by
Al-Nasir, Jamie 2012
▴ 10
0
votes
0
replies
2.5k
views
SRAdb package - problems
Genetics
SRAdb
Genetics
SRAdb
11.9 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.8k
views
Is it possible to get SRA sample attributes for a given sample or experiment ID?
SRAdb
SRAdb
12.1 years ago
Vladimir Morozov
▴ 130
0
votes
2
replies
2.5k
views
getSRAdbFile cannot open URL
SRAdb
SRAdb
updated 12.6 years ago by
Martin Morgan
25k • written 12.6 years ago by
Nicholas Stong
▴ 10
0
votes
0
replies
1.5k
views
SRAdb: differences between the database and the NCBI website
PROcess
SRAdb
PROcess
SRAdb
12.8 years ago
Ben Woodcroft
▴ 40
0
votes
1
reply
1.6k
views
SRAdb: is the database missing some entries? (Ben Woodcroft)
SRAdb
SRAdb
updated 12.8 years ago by
Ben Woodcroft
▴ 40 • written 12.8 years ago by
Jack Zhu
▴ 170
0
votes
0
replies
1.6k
views
Cevap: Re: SRAdb error
SRAdb
SRAdb
13.1 years ago
Dan Tenenbaum
★ 8.2k
0
votes
2
replies
2.0k
views
SRAdb error
SRAdb
SRAdb
updated 13.1 years ago by
Sean Davis
21k • written 13.1 years ago by
Ayten YIGITER
▴ 10
0
votes
0
replies
1.7k
views
Bioconductor Digest, Vol 95, Issue 7
PROcess
SRAdb
PROcess
SRAdb
14.3 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.7k
views
SRAdb listFastq error
SRAdb
SRAdb
updated 14.3 years ago by
Sean Davis
21k • written 14.3 years ago by
Mark Dunning
★ 1.1k
0
votes
8
replies
2.6k
views
'SRAdb useful for visualizing BAM files'
SRAdb
SRAdb
updated 15.0 years ago by
Jack Zhu
▴ 170 • written 15.0 years ago by
Paul Shannon
★ 1.1k
28 results • Page
1 of 1
Recent ...
Replies
Comment: How to perform batch correction on scRNA-seq with confounding plate effects?
by
瑞宏
• 0
I would like to share my own understanding: in single-cell RNA sequencing (scRNA-seq), batch correction is solely intended to identify the …
Comment: DiffBind can't find a DAR
by
Mengjun
• 0
Additionally, i checked my bigwig in igv, it shows that the ctrl_1 is more like ko_1, and ctrl_2's track is more like ko_2's track. Did an…
Comment: European Bioconductor Conference 2023 planning
by
ht
• 0
Great news about the European Bioconductor Conference 2023 planning! As someone who enjoys statistical computing and bioinformatics, I'm ex…
Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label
by
njmcdirectportal.com
• 0
This is a great post. I like this topic. I found many interesting things from this site. Thanks for posting this again https://www.njmcdire…
Answer: Version conflict when pushing to scQTLtools devel branch
by
shepherl
4.1k
There is a Bioconductor release today. There were notifications on the bioc-devel mailing list https://stat.ethz.ch/pipermail/bioc-devel…
Votes
Bioconductor 3.21 is Released!
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Comment: GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: GSVA ssGSEA vs. Broad implementation of ssGSEA
GSVA ssGSEA vs. Broad implementation of ssGSEA
Awards
• All
Popular Question
to
Mengjun
• 0
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.1k
Popular Question
to
Dario Strbenac
★ 1.6k
Popular Question
to
matthew
• 0
Locations
• All
San Diego,
1 hour ago
WEHI, Melbourne, Australia,
1 hour ago
United States,
2 hours ago
EMBL Heidelberg,
3 hours ago
UPF, Barcelona, Spain,
4 hours ago
Traffic: 462 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6