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STRINGdb
•
reset
0
votes
6
replies
636
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 5 weeks ago by
qianyi13
• 0 • written 8 weeks ago by
Pavel
• 0
0
votes
2
replies
316
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData
STRINGdb
DifferentialExpression
GraphAndNetwork
Network
4 months ago
Luca
• 0
2
votes
5
replies
994
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 14 days ago by
damian.szk
▴ 80 • written 4 months ago by
Abhishek
• 0
0
votes
1
reply
286
views
Specifying evidence channels in STRINGdb
STRINGdb
stringdb
6 months ago
robynne.braun
• 0
0
votes
7
replies
1.1k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 8 months ago by
damian.szk
▴ 80 • written 8 months ago by
Furkan
• 0
0
votes
0
replies
390
views
Issues setting background in STRINGdb
STRINGdb
MSstats
10 months ago
samsiljee
• 0
2
votes
2
replies
1.0k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
13 months ago
Charlotte Soneson
▴ 170
2
votes
3
replies
862
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
23 months ago
AstrobioMike
• 0
1
vote
2
replies
1000
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
2.1 years ago • updated 2.0 years ago
Abhishek
• 0
2
votes
4
replies
1.7k
views
STRINGdb string_db$map error
STRINGdb
HELP
updated 14 months ago by
Rodrigo
▴ 10 • written 2.1 years ago by
Jessica
▴ 10
0
votes
6
replies
2.0k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
2.3 years ago • updated 2.2 years ago
Wolfgang RAFFELSBERGER
▴ 140
2
votes
9
replies
2.0k
views
STRINGdb images very low quality?
STRINGdb
updated 2.3 years ago by
damian.szk
▴ 80 • written 2.4 years ago by
jarod
▴ 30
3
votes
4
replies
2.2k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb
R
updated 2.3 years ago by
damian.szk
▴ 80 • written 2.5 years ago by
qardessio
▴ 10
0
votes
3
replies
1.3k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 2.6 years ago by
damian.szk
▴ 80 • written 2.7 years ago by
Wolfgang RAFFELSBERGER
▴ 140
0
votes
1
reply
722
views
Error in mapping the gene names to the STRINGdb identifiers
PPI
STRINGdb
updated 2.6 years ago by
damian.szk
▴ 80 • written 2.7 years ago by
Ashish Jain
▴ 10
0
votes
0
replies
823
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R
STRINGdb
2.8 years ago
choijamts
• 0
0
votes
1
reply
1.6k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb
Network
updated 2.9 years ago by
Kevin Blighe
★ 3.9k • written 2.9 years ago by
Saransh
• 0
1
vote
1
reply
904
views
How to find the source code of the package STRINGdb ?
STRINGdb
Bioconductor
updated 3.2 years ago by
shepherl
3.8k • written 3.2 years ago by
deepue
▴ 10
0
votes
1
reply
775
views
How can I download all supported species information table of STRINGdb V11
STRINGdb
STRING
updated 3.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.4 years ago by
Evan-GIBH
• 0
0
votes
15
replies
2.5k
views
Is the STRINGdb server down?
STRINGdb
R
protein
updated 4.9 years ago by
zhanghongjie000
• 0 • written 5.1 years ago by
shahroze786
• 0
2
votes
4
replies
1.5k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
4.9 years ago
Moosa
• 0
0
votes
2
replies
1.2k
views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
5.1 years ago
Samuel Lee
• 0
0
votes
1
reply
976
views
STRINGdb: enrichment function raises error
STRINGdb
stringdb
gene set enrichment analysis
software error
go
5.4 years ago
wsciekly.maciek
▴ 10
0
votes
1
reply
831
views
error with STRINGdb package to download the graph
stringdb
R
5.8 years ago
Salvo88
▴ 20
0
votes
1
reply
952
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi
stringdb
mus musculus
updated 6.0 years ago by
damian.szk
▴ 80 • written 6.0 years ago by
hkarakurt
▴ 20
0
votes
4
replies
1.3k
views
problem with get_link function
STRINGdb
get_link
bug
6.3 years ago
cristinapasi
• 0
0
votes
0
replies
1.0k
views
Problem with link generated with R using the string_db$get_link
stringdb
7.0 years ago
Ilario De Toma
▴ 10
0
votes
3
replies
2.4k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb
vignette
updated 7.0 years ago by
Gregor Rot
▴ 10 • written 7.0 years ago by
mwinerip
• 0
1
vote
2
replies
1.3k
views
string-db.org link not working in generated graphic
STRINGdb
7.4 years ago • updated 7.3 years ago
florian.reisinger
• 0
0
votes
1
reply
1.3k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb
error
7.5 years ago
Lluís Revilla Sancho
▴ 730
1
vote
2
replies
1.8k
views
How to export a STRINGDB network to XML
STRINGdb
updated 9.0 years ago by
atariw
▴ 10 • written 9.0 years ago by
Aditya
▴ 160
31 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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