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60
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Gordon Smyth
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670
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280
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50
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180
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80
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1000
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40
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Recent ...
Replies
Comment: DESEQ2 looking at main effects while controlling for a continuous variable
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James W. MacDonald
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The covariate is accounted for when you fit the model, so you don't need to do anything with it at the contrast step.
You don't need a con…
Comment: DESEQ2 looking at main effects while controlling for a continuous variable
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Lennie
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Thank you so much for taking the time and for the detailed explanation!
I was wondering, in your numeric contrast of c(1, -1, 0,0,0), doe…
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If you use a factor effects model (with an intercept), then you will have a baseline group (the intercept), and all other coefficients exce…
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The issue is still there and it is a real pain. ape and ade4 are used by packages like Phyloseq. There should be a way to avoid these inc…
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