Biostar SVA

Showing : SVA • reset

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sva DESeq2

7 days ago • updated 4 days ago Marie • 0

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343

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sva

updated 19 days ago by James W. MacDonald 60k • written 26 days ago by Jasmin • 0

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148

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sva

4 weeks ago shdam ▴ 10

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341

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sva DESeq2

8 weeks ago Kent • 0

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5.7k

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sva

updated 11 weeks ago by wahaha • 0 • written 4.8 years ago by anton.kratz ▴ 60

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123

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RUVSeq sva DESeq2

updated 11 weeks ago by James W. MacDonald 60k • written 11 weeks ago by ramonfallon • 0

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238

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RNA Combat sva R

12 weeks ago • updated 11 weeks ago takemoto • 0

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161

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BatchEffect combat sva edgeR RRBSdata

updated 4 months ago by Gordon Smyth 46k • written 4 months ago by Mageiros • 0

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247

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BatchEffect limma sva DifferentialExpression

updated 5 months ago by ATpoint ★ 1.4k • written 5 months ago by nhaus • 0

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442

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DESeq2 sva

5 months ago Clay • 0

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349

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RNASeq sva svaseq

updated 6 months ago by James W. MacDonald 60k • written 6 months ago by Bex • 0

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1.2k

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RUVSeq FPKM removeBatchEffect RNA-seq sva

updated 7 months ago by ATpoint ★ 1.4k • written 16 months ago by Xiaojie Cheng • 0

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290

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limma sva Leafcutter SVAseq

10 months ago georgia.katsoula ▴ 40

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1.5k

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ComBat sva

10 months ago NewBioInfo ▴ 10

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1.5k

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limma sva block

updated 5 months ago by stuartthafass • 0 • written 7.8 years ago by kodream ▴ 20

15 results • Page 1 of 1

Recent ...

Replies

Answer: Conversion of UniProt to Ensembl by James W. MacDonald 60k

I will provide an example below. But first, there is a vignette for biomaRt (actually two), and it has extensive examples of how to use the…

Comment: the difference between getGEO and getGEOSuppFiles by Fatemeh • 0

thank you!

Answer: the difference between getGEO and getGEOSuppFiles by James W. MacDonald 60k

When submitting data to GEO, you are supposed to provide both the raw data and a matrix of processed data. When you use `getGEO` you get th…

Comment: error running UniProt.ws by James W. MacDonald 60k

https://www.bioconductor.org/checkResults/3.15/bioc-LATEST/UniProt.ws/nebbiolo1-install.html

Comment: error running UniProt.ws by James W. MacDonald 60k

@marcelramos You have introduced a dependency on `BiocBaseUtils`, but that package is only available in devel.

Votes

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

Answer: the difference between getGEO and getGEOSuppFiles

Answer: TPM normalization starting with read counts

Awards • All

Scholar to James W. MacDonald 60k

Popular Question to Matthew Ritchie ▴ 1000

Scholar to Thomas Carroll ▴ 410