Bioconductor SVA

Showing : SVA • reset

votes

replies

487

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limma sva variancePartition voom RNASeq

updated 6 weeks ago by Gordon Smyth 52k • written 6 weeks ago by Lina ▴ 10

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461

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meta-analysis sva Combat_Seq RNAseq

3 months ago Travis • 0

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11k

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sva

updated 5 months ago by ndphuc1605 • 0 • written 7.3 years ago by anton.kratz ▴ 60

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968

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sva

6 months ago Robert • 0

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923

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ComBat-seq sva

updated 9 months ago by W. Evan Johnson ▴ 870 • written 9 months ago by schlumbohm • 0

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949

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RUVSeq sva

9 months ago nhaus ▴ 70

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493

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DESeq2 sva

9 months ago michelafrancesconi8 • 0

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931

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ComBat sva edgeR

9 months ago Lucy ▴ 60

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926

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DESeq2 BatchEffect sva

10 months ago michelafrancesconi8 • 0

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613

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DESeq2 sva

updated 10 months ago by James W. MacDonald 67k • written 10 months ago by MEME ▴ 10

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1.0k

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DESeq2 BatchEffect sva limma

updated 9 months ago by Michael Love 43k • written 15 months ago by Crystal571 • 0

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2.1k

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RUVSeq sva limma

updated 9 months ago by Gordon Smyth 52k • written 16 months ago by Jonathan ▴ 10

12 results • Page 1 of 1

Recent ...

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Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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