Bioconductor SVAseq

Showing : SVAseq • reset

votes

replies

6.7k

views

deseq2 svaseq

9.4 years ago • updated 9.3 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

votes

replies

2.4k

views

svaseq dexseq

updated 9.0 years ago by Alejandro Reyes ★ 1.9k • written 9.0 years ago by tofukaj • 0

vote

replies

2.3k

views

deseq2 svaseq

updated 8.5 years ago by Michael Love 43k • written 8.5 years ago by gpalidwor ▴ 10

votes

replies

3.6k

views

svaseq combat sva RANseq batcheffect removebatcheffect

updated 9.3 years ago by Jakub ▴ 50 • written 9.3 years ago by amoltej ▴ 10

vote

replies

4.5k

views

deseq2 sva svaseq pca

9.7 years ago Peter Alto ▴ 20

votes

replies

2.2k

views

edger sva svaseq limma

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by cats_dogs ▴ 20

votes

replies

2.5k

views

sva svaseq

updated 8.7 years ago by Guido Hooiveld ★ 4.1k • written 8.7 years ago by wamiqsaifi • 0

votes

replies

2.4k

views

deseq2 svaseq

7.0 years ago bioinfo • 0

votes

replies

3.2k

views

sva svaseq batcheffectcorrection

updated 9.5 years ago by Jeff Leek ▴ 650 • written 9.5 years ago by szenitha ▴ 20

votes

replies

3.0k

views

limma sva svaseq

updated 9.0 years ago by Aaron Lun ★ 29k • written 9.0 years ago by Bogdan ▴ 670

vote

replies

4.4k

views

DESeq2 sva svaseq batch effect correction

8.0 years ago L_K • 0

votes

replies

1.0k

views

DESeq2 Normalisation Bulkrnaseq Svaseq

20 months ago BioinfGuru ▴ 70

votes

1.1k

views

RUVSeq svaseq

3.6 years ago Tongjun • 0

votes

2.5k

views

deseq2 sva svaseq

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by szenitha ▴ 20

vote

2.1k

views

ruvseq svaseq edaseq

updated 8.3 years ago by davide risso ▴ 980 • written 8.3 years ago by llo ▴ 10

vote

1.3k

views

MEDIPS svaseq sva

updated 7.0 years ago by Lukas Chavez ▴ 570 • written 7.0 years ago by tofukaj • 0

vote

1.4k

views

svaseq sva

6.9 years ago flippy23 • 0

votes

1.2k

views

sva svaseq surrogate variable analysis

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by Mozart ▴ 30

votes

replies

1.7k

views

RNASeq sva svaseq

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by Bex • 0

votes

replies

1.5k

views

svaseq batcheffectcorrection

8.3 years ago burcu.atasu • 0

votes

replies

1.3k

views

limma sva Leafcutter SVAseq

4.4 years ago georgia.katsoula ▴ 40

votes

replies

1.7k

views

sva svaseq batch effect batch effects batch effect correction

8.5 years ago vedran.franke • 0

22 results • Page 1 of 1

Recent ...

Replies

Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

Awards • All

Popular Question to Guido Hooiveld ★ 4.1k