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SVA and proportion of variance explained
sva
svd
explained variance
pca
updated 5.6 years ago by
Jeff Leek
▴ 610 • written 5.6 years ago by
Mattia
▴ 10
0
votes
2
replies
697
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Some terms in EPIC Methylation Analysis
ChAMP
SVD
Array
Slide
Sample Plate
updated 3.6 years ago by
Yuan Tian
▴ 250 • written 3.6 years ago by
yuabrahamliu
• 0
0
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1
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1.3k
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News:
Bug in ChAMP package champ.SVD() function
champ
methylation
450k
SVD
EPIC
News
5.7 years ago
Yuan Tian
▴ 90
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Answer: RPX PXDataset error
by
Laurent Gatto
1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue
by
shepherl
3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Answer: Package name already exists due to previous issue
by
James W. MacDonald
59k
You should probably send this question to bioc-devel@r-project.org
Comment: edgeR - how to convert DGELRT and other classes to .csv files
by
Benjamin
• 0
Thank you Aaron. I am wondering if you know how to write the .csv file with both the topTags (statistical analysis) and the original counts…
Answer: error with: .make_splicings <- function(exons, cds, stop_codons=NULL)
by
James W. MacDonald
59k
That's a very old build, and an old version of the GFF standard. You would be better off getting something more recent. ``` > txdb <- m…
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Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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