Bioconductor Sample Size

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885

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deseq2 sample size

updated 5.4 years ago by Michael Love 41k • written 5.4 years ago by kel.chee86 • 0

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1.3k

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deseq2 nbinomLRT sample size biocparallel

updated 5.5 years ago by davide risso ▴ 950 • written 5.5 years ago by mcalgaro93 • 0

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2.1k

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limma sample size microarrays statistical power

6.1 years ago eleonoregravier ▴ 70

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1.6k

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atac-seq sample size Peak Normalize

6.3 years ago jaime.alvarez.benayas • 0

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4.7k

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deseq2 deseq sample size

6.5 years ago MrHodor • 0

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1.6k

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csaw differential binding analysis sample size independent filtering statistical power

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by zhangly811 • 0

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1.8k

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edger pvalue sample size

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by Venu Pullabhatla ▴ 40

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2.2k

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rnaseqpower sspa sample size sequencing complex-design

updated 8.2 years ago by m.van_iterson ▴ 20 • written 8.2 years ago by roser.navarro • 0

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14k

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WGCNA Sample Size Outliers

updated 8.6 years ago by mh.manoj • 0 • written 9.2 years ago by brohawndg ▴ 150

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Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0