Bioconductor ScanBamParam

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scanbam scanbamparam rsamtools

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by Johannes Rainer ★ 2.1k

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shortread readAligned reverseComplement ScanBamParam

10.3 years ago jdavison ▴ 10

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genomicalignments scanbamparam

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by rasi1983 ▴ 10

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scanbamparam bam

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by KB ▴ 50

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rsamtools isSupplementary scanbamparam scanbamflag countbam

updated 6.5 years ago by Martin Morgan 25k • written 6.5 years ago by galeoni • 0

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scanBam scanbamparam

updated 10.2 years ago by Martin Morgan 25k • written 10.2 years ago by felix.klein ▴ 150

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rsamtools scanbamparam bam

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by António Miguel de Jesus Domingues ▴ 510

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GenomicAlignments bam scanbamparam

8.3 years ago mikko.arvas • 0

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rsamtools scanbamparam mapqfilter

7.8 years ago Devin King ▴ 20

9 results • Page 1 of 1

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Comment: Intepretation of results by Tom • 0

[Locksmith Wombwell][1] I have been interested in using AUCell as a way to determine significantly enriched pathways in my single cell spat…

Comment: Gene Ontology (GO) Analysis by Tom • 0

[Locksmith near me][1] Hello, I'm learning about Gene Ontology analysis. I'm trying to understand the difference between the hyperGTest fun…

Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k