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Scran
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418
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modelGeneVar in MulticoreParam: wrong args for environment subassignment
BiocParallel
scran
BiocParall
4 months ago
Lluís Revilla Sancho
▴ 760
0
votes
5
replies
674
views
modelGeneVarByPoisson error selecting bandwidth automatically
scran
updated 7 months ago by
Peter Hickey
▴ 750 • written 7 months ago by
Lluís Revilla Sancho
▴ 760
0
votes
0
replies
268
views
Differential Gene Wrapper for Propotion of Detected
scran
7 months ago
Dario Strbenac
★ 1.6k
0
votes
4
replies
700
views
Single Cell Experiment : Differential Expression "List of length 0" - Help!
DifferentialExpression
scran
scater
SingleCellExperiment
edgeR
8 months ago
vohara4
• 0
1
vote
2
replies
487
views
Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
9 months ago
ATpoint
★ 4.6k
2
votes
1
reply
644
views
Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 10 months ago by
ATpoint
★ 4.6k • written 10 months ago by
Dario Strbenac
★ 1.6k
6 results • Page
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Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
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