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Scran
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Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 2 days ago by
ATpoint
★ 4.0k • written 3 days ago by
Dario Strbenac
★ 1.5k
0
votes
3
replies
331
views
scran package: quickCluster and calculateSumFactors parallelization
BiocParallel
scran
updated 10 weeks ago by
ATpoint
★ 4.0k • written 10 weeks ago by
qwang178
• 0
1
vote
2
replies
626
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
3 months ago
ruba-mahmoud
• 0
0
votes
1
reply
330
views
Speeding up large scale scRNAseq analyses in R and improve memory
scran
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
Maximilian
• 0
0
votes
2
replies
729
views
runPCA in a SingleCellExperiment results ina colMeans error
scran
SingleCellExperiment
9 months ago
Lluís Revilla Sancho
▴ 730
2
votes
2
replies
4.7k
views
scran ScoreMarkers throws a warning
scoreMarkers
scran
updated 9 months ago by
Peter Hickey
▴ 670 • written 9 months ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.2k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
9 months ago
Lluís Revilla Sancho
▴ 730
0
votes
2
replies
635
views
Scaling and normalization by deconvolution of SMART-Seq 2 data
scran
Clustering
SingleCell
Normalization
12 months ago
Assa Yeroslaviz
★ 1.5k
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
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Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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