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Scran
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Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 29 days ago by
ATpoint
★ 4.0k • written 29 days ago by
Dario Strbenac
★ 1.5k
0
votes
3
replies
396
views
scran package: quickCluster and calculateSumFactors parallelization
BiocParallel
scran
updated 3 months ago by
ATpoint
★ 4.0k • written 3 months ago by
qwang178
• 0
1
vote
2
replies
757
views
ScRNAseq analysis scran :: quickcluster Error
scRNAseq
quickcluster
scRNA
scran
4 months ago
ruba-mahmoud
• 0
0
votes
1
reply
345
views
Speeding up large scale scRNAseq analyses in R and improve memory
scran
updated 7 months ago by
ATpoint
★ 4.0k • written 8 months ago by
Maximilian
• 0
0
votes
2
replies
793
views
runPCA in a SingleCellExperiment results ina colMeans error
scran
SingleCellExperiment
10 months ago
Lluís Revilla Sancho
▴ 730
2
votes
2
replies
5.2k
views
scran ScoreMarkers throws a warning
scoreMarkers
scran
updated 10 months ago by
Peter Hickey
▴ 740 • written 10 months ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.3k
views
P-value histogram of testLinearModel is not uniform
smart-seq2
scRNAseq
scran
10 months ago
Lluís Revilla Sancho
▴ 730
7 results • Page
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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Dear Michael, I tried all three ways (the orIginal, increasing the number of required samples,and subsetting (the countdata and metadata be…
Comment: DESeq2 - dispersion estimation when there is none
by
Michael Love
41k
The red line does assume that shape but the fact the black points show that pattern is discussed in the 2014 paper. > Some caution is warr…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…
Comment: Methylation Analysis experiment design using Limma
by
hortense96
• 0
Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…
Comment: Limma design with continuous and categorical covariates
by
hortense96
• 0
Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …
Votes
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
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