Bioconductor Scrna

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720

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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656

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scrna scRNAseq

updated 5 months ago by Gabriella • 0 • written 13 months ago by sarah.jobbins • 0

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1.0k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by garcia • 0

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392

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scRNA scRNAseq

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Omer • 0

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627

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scran Normalization scRNA BatchEffect

15 months ago r_grau ▴ 10

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2.2k

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DropletUtils emptyDrops scRNA scRNAseq 10x

20 months ago Peter Hickey ▴ 690

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2.2k

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DESeq2 Scrna scRNAseq

2.7 years ago RDoc ▴ 10

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980

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scRNAseq scRNA batchelor BatchEffect

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Adrien • 0

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1.7k

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scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.7k

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Seurat scRNA debugging exceptions unit-test

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by moldach ▴ 20

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4.6k

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scRNA monocle packages Tutorial

4.6 years ago 444579004 • 0

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1.5k

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scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

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886

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SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

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4.2k

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MAST scRNA GSEA

updated 6.7 years ago by Andrew_McDavid ▴ 270 • written 6.7 years ago by siajunren • 0

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1.5k

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scater scrna

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hrishi27n ▴ 20

15 results • Page 1 of 1

Recent ...

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Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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