Bioconductor Scrna

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4.6k

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scRNA monocle packages Tutorial

4.6 years ago 444579004 • 0

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4.2k

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MAST scRNA GSEA

updated 6.7 years ago by Andrew_McDavid ▴ 270 • written 6.7 years ago by siajunren • 0

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2.2k

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DropletUtils emptyDrops scRNA scRNAseq 10x

20 months ago Peter Hickey ▴ 740

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2.2k

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DESeq2 Scrna scRNAseq

2.8 years ago • updated 2.7 years ago RDoc ▴ 10

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1.7k

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scRNA zinbwave batch IntegratedData

updated 3.6 years ago by davide risso ▴ 950 • written 3.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.7k

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Seurat scRNA debugging exceptions unit-test

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by moldach ▴ 20

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1.5k

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scrna scrnaseq differential gene expression

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by d.depledge • 0

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1.5k

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scater scrna

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by hrishi27n ▴ 20

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1.0k

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scRNAseq scrna paireddesign edgeR pseudobulking

updated 8 months ago by Gordon Smyth 50k • written 8 months ago by garcia • 0

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984

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scRNAseq scRNA batchelor BatchEffect

updated 3.4 years ago by Aaron Lun ★ 28k • written 3.4 years ago by Adrien • 0

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887

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SCRNA

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by sumetha • 0

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742

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scRNAseq quickcluster scRNA scran

4 months ago ruba-mahmoud • 0

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661

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scrna scRNAseq

updated 5 months ago by Gabriella • 0 • written 13 months ago by sarah.jobbins • 0

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636

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scran Normalization scRNA BatchEffect

15 months ago r_grau ▴ 10

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402

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scRNA scRNAseq

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by Omer • 0

15 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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