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Seqnames
•
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0
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5
replies
2.5k
views
Grange object subsetting using seqnames
Seqnames
makeGRangesFromDataFrame
GRanges
Subsetting
GenomicRanges
2.8 years ago
rtrivedi1
▴ 10
2
votes
1
reply
784
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.5 years ago
s.ghignone
▴ 10
0
votes
1
reply
970
views
GenomeInfoDb: where are the genome patches?
seqnames
genomeinfodb
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
matt.chambers42
▴ 10
0
votes
2
replies
1.8k
views
GenomicRanges: `seqnames<-` can not work as expected
genomicranges
seqnames
factor
7.5 years ago
wcstcyx
▴ 30
0
votes
1
reply
876
views
error in noGGi
software error
seqnames
characters
r
chipseq
7.9 years ago
awakumaya
• 0
17
votes
4
replies
16k
views
How to properly sort GRanges?
granges
genomicranges
sort
seqnames
order
updated 9.0 years ago by
yinghua
▴ 30 • written 9.4 years ago by
enricoferrero
▴ 660
0
votes
6
replies
6.2k
views
GRanges: problem with multiple seqnames and seqlengths
GRanges
seqnames
seqlengths
IRanges
9.6 years ago
topher.hamm
• 0
7 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
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