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Shiny
•
reset
0
votes
0
replies
547
views
Displaying large image stacks (e.g. from multiplexed immunohistochemistry) using shiny and EBImage
shiny
EBImage
21 months ago
Wolfgang Huber
★ 13k
0
votes
1
reply
782
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 2.1 years ago by
anna.stanislawska
• 0 • written 2.1 years ago by
Mari
• 0
0
votes
0
replies
746
views
Export Results from BatchQC Shiny App
BatchQC
RNA-seq
R
Shiny
batch-effect
4.0 years ago
manninm
• 0
0
votes
1
reply
923
views
AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub
Shiny
Rstudio
updated 4.1 years ago by
shepherl
3.8k • written 4.2 years ago by
bwiley4
• 0
6
votes
0
replies
1.3k
views
News:
Winners of the 1st Shiny Contest: iSEE
iSEE
shiny
summarizedExperiment
News
5.1 years ago
Aaron Lun
★ 28k
0
votes
7
replies
1.5k
views
Problems with DESeq2 'design' parameter using Shiny/rhandsontable
deseq2
shiny
design
rhandsontable
hot_to_r()
updated 5.1 years ago by
Michael Love
41k • written 5.1 years ago by
hinkel2
• 0
0
votes
1
reply
1.9k
views
DEBrowser shiny - Maximum upload size exceeded - error
DEBrowser
shiny
5.3 years ago
tomasfly
• 0
0
votes
3
replies
1.4k
views
browseGenome with Shiny
rtracklayer
browsegenome
shiny
updated 5.5 years ago by
Michael Lawrence
★ 11k • written 5.5 years ago by
vivek82
• 0
12
votes
3
replies
6.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
6.1 years ago
lloyd.izard
▴ 80
3
votes
3
replies
1.3k
views
Sharing SC3_interactive results
SC3
single-cell
shiny
updated 7.0 years ago by
Vladimir Kiselev
▴ 150 • written 7.0 years ago by
cfustero
▴ 20
0
votes
1
reply
1.2k
views
R packages developed using shiny
shiny
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
bhakti.dwivedi
• 0
0
votes
1
reply
1.6k
views
News:
Plotly uprading issue in ChAMP package
ChAMP
Epigenetics
plotly
Shiny
GUI
News
7.5 years ago • updated 7.3 years ago
Yuan Tian
▴ 90
1
vote
1
reply
1.3k
views
reactive CellCODE heatmap
cellcode
shiny
heatmap
updated 8.0 years ago by
Andrzej Oleś
▴ 750 • written 8.0 years ago by
christopher.clarskon15
▴ 20
0
votes
1
reply
1.6k
views
shiny account on mac not deploying server
limmagui
shiny
8.1 years ago
christopher.clarskon15
▴ 20
7
votes
0
replies
3.7k
views
Tutorial:
New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation
genomicranges
visualization
docker
shiny
Tutorial
8.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.8k
views
Shiny - error messages with validate
R
validate
shiny
8.5 years ago
alptaciroglu
▴ 50
1
vote
7
replies
2.7k
views
Shiny app for RefNet, PSICQUIC: annotated protein/protein interactions
shiny
network
interactions
9.5 years ago
pshannon
▴ 100
17 results • Page
1 of 1
Recent ...
Replies
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Votes
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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