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SingleCell
•
reset
0
votes
0
replies
143
views
Job:
Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics
JobPosting
SingleCell
Spatial
SpatialExperiment
23 days ago
Peter Hickey
▴ 670
3
votes
1
reply
693
views
'Seurat' package
singlecell
seurat
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
Sooni
▴ 10
0
votes
1
reply
620
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 10 months ago by
Peter Hickey
▴ 670 • written 10 months ago by
sandra.garces.19
• 0
0
votes
2
replies
581
views
Why my log2fcs are too high?
DESeq2
SingleCell
log2FC
11 months ago
paria.alipour
• 0
0
votes
2
replies
636
views
Scaling and normalization by deconvolution of SMART-Seq 2 data
scran
Clustering
SingleCell
Normalization
12 months ago
Assa Yeroslaviz
★ 1.5k
1
vote
4
replies
645
views
Single-cell differential expression analysis with multiple samples
SingleCell
12 months ago
iaradsouza1
• 0
0
votes
8
replies
1.1k
views
fail to annotate chromosome data to single cell object
error
SingleCell
annotate
updated 4 months ago by
yw24418
• 0 • written 12 months ago by
sandra.garces.19
• 0
0
votes
0
replies
589
views
Job:
Open position in the CBIO lab: single-cell proteomics
Proteomics
SingleCell
JobPosting
MassSpectrometry
12 months ago
Laurent Gatto
1.6k
0
votes
3
replies
1.2k
views
Knee and Inflection of DropletUtils
SingleCell
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
ankuuu
• 0
0
votes
1
reply
2.1k
views
DESeq2 after Seurat analysis on integrated datasets
DESeq2
SingleCell
GeneExpression
Seurat
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
bio.boi
• 0
1
vote
1
reply
615
views
Pseudobulk running all groups together vs subsetting first
DESeq2
edgeR
SingleCell
updated 13 months ago by
Wolfgang Huber
★ 13k • written 13 months ago by
nhaus
▴ 10
0
votes
1
reply
604
views
Job:
Reopened: 'Omics data analyst for HPCBio, University of Illinois
SingleCell
Spatial
RNA-seq
13 months ago
Jenny Drnevich
★ 2.0k
0
votes
3
replies
798
views
Tissue Level Differential Expression Analysis
DESeq2
DifferentialExpression
differentialex
Pseudobulk
SingleCell
updated 15 months ago by
Michael Love
41k • written 15 months ago by
skanda.hebbale
• 0
0
votes
1
reply
625
views
Job:
'Omics data analyst for HPCBio, University of Illinois
SingleCell
rnaseq
methylationArrayAnalysis
Spatial
written 15 months ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
788
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 16 months ago by
Gordon Smyth
50k • written 16 months ago by
irvin.ng
• 0
0
votes
1
reply
714
views
allele count data bioc object
SingleCell
SingleCellMultiModal
allele
updated 17 months ago by
Michael Love
41k • written 17 months ago by
oliver.crook
• 0
0
votes
0
replies
789
views
Job:
Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation
SingleCell
Autism
Neurogenesis
Epigenetics
17 months ago
sudhir.thakurela
• 0
0
votes
0
replies
505
views
Gene Id duplicated
SingleCell
SingleCellData
updated 18 months ago by
ATpoint
★ 4.0k • written 18 months ago by
Romina
• 0
0
votes
1
reply
703
views
Set up "mock" cell type as the reference?
DESeq2
SingleCell
updated 18 months ago by
Michael Love
41k • written 18 months ago by
Yiqi
▴ 10
0
votes
0
replies
432
views
weighting sample group
monocle
SingleCell
DifferentialExpression
18 months ago
Sogand
• 0
2
votes
2
replies
736
views
How to detect LacZ tagged cells from single cell
SingleCell
SingleCellExperiment
SingleCellWorkflow
SingleCellData
18 months ago
k1m
▴ 20
0
votes
2
replies
884
views
how to plot a fitting line on the testPseudotime
Pseudotime
testPseudotime
TSCAN
SingleCell
OSCA
18 months ago
Guandong Shang
▴ 40
2
votes
4
replies
862
views
Summary of library size factor is all equal to one
SingleCell
SingleCellData
SingleCellWorkflow
SingleCellExperiment
18 months ago
Romina
• 0
0
votes
1
reply
1.1k
views
Error in .testForValidKeys(x, keys, keytype, fks) :
SingleCell
AnnotationDbi
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
techgirl2022
• 0
0
votes
1
reply
891
views
Error in running: classifySingleR from SingleR package
SingleR
SingleCell
updated 20 months ago by
ATpoint
★ 4.0k • written 20 months ago by
amit.korngut
• 0
1
vote
2
replies
1.3k
views
DESeq2 aggregated single cell data
pseudobulk
SingleCell
DESeq2
20 months ago
fluentin44
• 0
0
votes
0
replies
634
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
21 months ago
Nik Tuzov
▴ 80
0
votes
0
replies
671
views
Performing DGE analysis with MAST on a variable with more than 2 levels
MAST
DEG
SingleCell
22 months ago
zroger499
• 0
2
votes
1
reply
706
views
() followed by [] within an argument in singlecell OSCA workflow
SingleCell
R
OSCA
updated 23 months ago by
jeroen.gilis
▴ 90 • written 23 months ago by
BioInfoBeginnerrr
• 0
2
votes
1
reply
1.6k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 2.2 years ago by
James W. MacDonald
65k • written 2.2 years ago by
NGS_enthusiast
• 0
0
votes
0
replies
692
views
Issues geting meaninfull results for single cell DGE using MAST
MAST
SingleCell
2.2 years ago
zroger499
• 0
0
votes
0
replies
841
views
Job:
Postdoc Opening in Bioinformatics or Computational Biology
SpatialData
scRNAseq
SingleCell
Omixer
2.2 years ago
Sebastian Lewandowski
• 0
2
votes
2
replies
1.1k
views
velociraptor preparation
SingleCellExperiment
singlecell
velociraptor
scvelo
updated 2.3 years ago by
ATpoint
★ 4.0k • written 2.3 years ago by
Pietro
▴ 40
0
votes
0
replies
686
views
Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
2.5 years ago
lpinello
• 0
1
vote
2
replies
987
views
Using limma duplicateCorrelation to account for donor/dataset effects in scRNA-Seq pseudobulk counts from multiple sources
limma
SingleCell
2.5 years ago
Andrew Pattison
• 0
0
votes
0
replies
678
views
Spike-In Cells for Normalization?
SpikeIn
SingleCell
2.6 years ago
mb1996
• 0
0
votes
0
replies
655
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
2.6 years ago
camp
• 0
0
votes
0
replies
858
views
Job:
Senior Bioinformatician - University of Alabama at Birmingham
JobPosting
Transcriptomics
SingleCell
RNA-seq
2.7 years ago
lianov
• 0
0
votes
1
reply
890
views
Differentially expressed genes across three different conditions
MAST
SingleCell
diffGeneAnalysis
updated 2.7 years ago by
James W. MacDonald
65k • written 2.7 years ago by
sofia.puvogel
• 0
3
votes
2
replies
2.1k
views
Merging only those samples sequenced over multiple batches - scRNA-seq
SingleCell
SingleCellExperiment
scater
3.1 years ago
camerond
• 0
0
votes
0
replies
881
views
Job:
Computational Biologist at Denali Therapeutics
Transcriptomics
SingleCell
JobPosting
3.2 years ago
Steve Lianoglou
★ 13k
0
votes
2
replies
1.4k
views
Removal of cell cycle effect using batchelor::regressBatches() and proper usage of corrected UMI matrix
scRNAseq
batchelor
SingleCell
SingleCellExperiment
scran
3.3 years ago
jirkanov
• 0
2
votes
1
reply
1.8k
views
DESeq2 DE gene expression of scRNA-seq pseudobulk
DESeq2
SingleCell
updated 3.3 years ago by
Michael Love
41k • written 3.3 years ago by
Christian
• 0
0
votes
1
reply
802
views
improving running time of runNMF
runNMF
scater
singlecell
SingleCellExperiment
updated 3.4 years ago by
Aaron Lun
★ 28k • written 3.4 years ago by
lirongrossmann
▴ 40
0
votes
0
replies
739
views
Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
scater
singlecell
scran
BatchEffect
3.4 years ago
hamza_karakurt
▴ 50
2
votes
6
replies
2.0k
views
Discarding ambient RNA using estimateAmbience
emptyDrop
ambient
singlecell
estimateAmbience
updated 3.5 years ago by
Aaron Lun
★ 28k • written 3.5 years ago by
lirongrossmann
▴ 40
0
votes
6
replies
2.5k
views
Discrepancy between cell type and cluster using SingleCellExperiment and SingleR
singlecell
singlecellexperiment
umap
singleR
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 80
0
votes
2
replies
1.4k
views
most correlated genes in SingleR
singlecell
singleR
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 40
0
votes
1
reply
1.3k
views
predicting cell type of clusters using singleR
singleR
singlecell
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 40
0
votes
3
replies
1.9k
views
marker genes in singleR
singleR
singlecell
singlecellexperiment
updated 3.6 years ago by
Aaron Lun
★ 28k • written 3.6 years ago by
lirongrossmann
▴ 40
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