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SingleCell
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45
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Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow
DifferentialExpression
SingleCell
SingleCellMultiModal
MAST
3 days ago
Nik Tuzov
▴ 70
0
votes
0
replies
76
views
Performing DGE analysis with MAST on a variable with more than 2 levels
MAST
DEG
SingleCell
6 weeks ago
zroger499
• 0
2
votes
1
reply
110
views
() followed by [] within an argument in singlecell OSCA workflow
SingleCell
R
OSCA
updated 9 weeks ago by
jeroen.gilis
▴ 70 • written 9 weeks ago by
BioInfoBeginnerrr
• 0
2
votes
1
reply
339
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 5 months ago by
James W. MacDonald
60k • written 5 months ago by
NGS_enthusiast
• 0
0
votes
0
replies
143
views
Issues geting meaninfull results for single cell DGE using MAST
MAST
SingleCell
5 months ago
zroger499
• 0
0
votes
0
replies
276
views
Job:
Postdoc Opening in Bioinformatics or Computational Biology
SpatialData
scRNAseq
SingleCell
Omixer
5 months ago
Sebastian Lewandowski
• 0
1
vote
2
replies
359
views
velociraptor preparation
SingleCellExperiment
singlecell
velociraptor
scvelo
updated 6 months ago by
ATpoint
★ 1.3k • written 6 months ago by
Pietro
▴ 30
0
votes
0
replies
217
views
Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
8 months ago
lpinello
• 0
1
vote
2
replies
357
views
Using limma duplicateCorrelation to account for donor/dataset effects in scRNA-Seq pseudobulk counts from multiple sources
limma
SingleCell
9 months ago
Andrew Pattison
• 0
0
votes
0
replies
186
views
Spike-In Cells for Normalization?
SpikeIn
SingleCell
10 months ago
mb1996
• 0
0
votes
0
replies
242
views
Job:
Computational postdoctoral fellow for cancer disparities research (Boston University)
DNASeq
RNASeq
SingleCell
10 months ago
camp
• 0
0
votes
0
replies
270
views
Job:
Senior Bioinformatician - University of Alabama at Birmingham
JobPosting
Transcriptomics
SingleCell
RNA-seq
11 months ago
lianov
• 0
0
votes
1
reply
260
views
Differentially expressed genes across three different conditions
MAST
SingleCell
diffGeneAnalysis
updated 12 months ago by
James W. MacDonald
60k • written 12 months ago by
sofia.puvogel
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: VariantAnnotation R Package - Merging Two VCF files
by
didanax972
• 0
In case you like to merge the numerous VCF files into a single file then you should opt for the VCF Merger tool. This tool is a dedicated a…
Comment: merging VCF files
by
didanax972
• 0
Use Merge VCF a quick and instant solution to combine multiple VCF files into a new VCF file. The tool effortlessly merges multiple VCF fil…
Comment: Error: DESeq(dds , useT = TRUE, minmu = 1e-06, test = "LRT", : likelih
by
ATpoint
★ 1.3k
Would you mind reading the vignette towards how the LRT works: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2…
Comment: cellCounts() function floating point error
by
Yang Liao
▴ 340
Thanks for the report but the error cannot be reproduced. We tested `Rsubread` 2.10.3 in `R` 4.2.0 and `Bioconductor` 3.15, and `cellCounts…
Comment: rtracklayer export GRangesList as gtf and change attributes
by
James
• 0
I have found a way to export a GTF so that the 3rd column no longer lists **sequence_feature** but instead lists the feature, such as **exo…
Votes
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
C: DESeq2 lfcShrink() usage of coef vs. usage of contrast
Comment: Using Age or other numerical variable to model expression in deseq2
Comment: Using Age or other numerical variable to model expression in deseq2
Answer: Using Age or other numerical variable to model expression in deseq2
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37k
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Nik Tuzov
▴ 70
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Kevin Blighe
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