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SingleCell
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Job:
Bioinformatics Spatial Omics and Proteomics Postdoc (Research Officer / Senior Research Officer) at WEHI (Melbourne, Australia)
Proteomics
JobPosting
SingleCell
Spatial
SpatialExperiment
24 days ago
Peter Hickey
▴ 670
3
votes
1
reply
694
views
'Seurat' package
singlecell
seurat
updated 10 months ago by
ATpoint
★ 4.0k • written 10 months ago by
Sooni
▴ 10
0
votes
1
reply
621
views
Choosing the right lower limit for emptyDrops
SingleCell
emptyDrops
10X
updated 10 months ago by
Peter Hickey
▴ 670 • written 10 months ago by
sandra.garces.19
• 0
0
votes
2
replies
583
views
Why my log2fcs are too high?
DESeq2
SingleCell
log2FC
11 months ago
paria.alipour
• 0
0
votes
2
replies
637
views
Scaling and normalization by deconvolution of SMART-Seq 2 data
scran
Clustering
SingleCell
Normalization
12 months ago
Assa Yeroslaviz
★ 1.5k
0
votes
8
replies
1.1k
views
fail to annotate chromosome data to single cell object
error
SingleCell
annotate
updated 4 months ago by
yw24418
• 0 • written 12 months ago by
sandra.garces.19
• 0
2
votes
4
replies
3.7k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 6 weeks ago by
Gordon Smyth
50k • written 4.7 years ago by
sambunga094
• 0
7 results • Page
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Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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