Bioconductor SingleCellData

Showing : SingleCellData • reset

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247

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imcRtools SingleCellData imcdatasets SpatialWorkflow

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by Simon • 0

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470

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tidyverse R SingleCellExperiment SingleCellData

updated 4 months ago by daenerystargaryen56 • 0 • written 4 months ago by Sitapriya • 0

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342

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AnnotationHubSoftware SingleCellData annotationTools

updated 5 months ago by ATpoint ★ 4.0k • written 5 months ago by yw24418 • 0

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654

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DropletUtils SingleCellData

updated 8 months ago by ATpoint ★ 4.0k • written 8 months ago by p.vlachou-efstathiou • 0

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882

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singleR SingleCellExperiment SingleCellData

9 months ago Matvii Mykhailichenko • 0

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588

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SingleCellData ComputationalBiology

12 months ago Chrysothemis ▴ 10

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716

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DimensionReduction SingleCellData multiomics MachineLearning

16 months ago Diego's • 0

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533

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SingleCell SingleCellData

updated 19 months ago by ATpoint ★ 4.0k • written 19 months ago by Romina • 0

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773

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SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData

19 months ago k1m ▴ 20

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899

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SingleCell SingleCellData SingleCellWorkflow SingleCellExperiment

19 months ago Romina • 0

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957

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SingleCellData splatter

updated 24 months ago by luke.zappia ▴ 50 • written 24 months ago by Fatima • 0

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779

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GSVA SingleCellData

updated 2.1 years ago by Robert Castelo ★ 3.3k • written 2.1 years ago by Amna • 0

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1.6k

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biobase SingleCellData seurat SingleCell

updated 2.2 years ago by James W. MacDonald 65k • written 2.2 years ago by NGS_enthusiast • 0

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1.8k

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SingleCellExperiment DropletUtils SingleCellData

updated 3.3 years ago by Aaron Lun ★ 28k • written 3.3 years ago by msn ▴ 10

14 results • Page 1 of 1

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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k

> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …

Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10

With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Votes

Answer: How to retrieve gene ontology GO class from gene list?

C: when to apply quantile normalization with voom in limma/voom framework with RNA-

A: How to know if I should use voomWithQualityWeights() or not?

A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom

Awards • All

Teacher to Gordon Smyth 50k