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James W. MacDonald
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updated 20 months ago by
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updated 2.3 years ago by
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2.5 years ago • updated 2.4 years ago
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updated 3.3 years ago by
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3.4 years ago • updated 3.3 years ago
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updated 3.5 years ago by
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updated 3.6 years ago by
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3.7 years ago
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updated 3.7 years ago by
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Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
•
0
Hello James,
Thank you for your answer and precise exemple ! It is disappointing but makes sense.
Best,
Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
•
0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
•
0
Hello James,
Thank you very much for your answer and taking the time to read my post.
I understand your remark, but isn't the approach o…
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