Showing : SingleR • reset
0
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3
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439
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dittobarplot Var error
RNASeq ditto dittoSeq SingleR
written 3 months ago by • 0
1
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2
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917
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Reduce single cell experiment size to use as reference for annotation with SingleR
SingleR SingleCellExperiment
4 months ago elgomez • 0
1
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4
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1.6k
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JoinLayers function for Seurat Object for annotation with SingleR
SingleR SeuratscRNA
written 4 months ago by ▴ 40
2
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4
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1.2k
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SingleR annotation of several slots/patients
SingleR
written 4 months ago by ▴ 40
0
votes
1
reply
292
views
SingleR Book Not Found
SingleR
updated 4 months ago by ▴ 740 • written 4 months ago by • 0
1
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2
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703
views
trying to add SingleR label to Seurat Object fails
SingleR Seurat
updated 5 months ago by ★ 4.0k • written 5 months ago by ★ 1.5k
0
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4
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2.9k
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SingleR Label.Ont
SingleR
updated 4 days ago by • 0 • written 7 months ago by • 0
0
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2
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873
views
Error in SingleR, no common genes between 'test' and 'ref'
singleR SingleCellExperiment SingleCellData
9 months ago Matvii Mykhailichenko • 0
0
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4
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3.6k
views
error in (function (classes, fdef, mtable) unable to find an inherited method for function logNormCounts for signature Seurat
seurat singleR
updated 10 months ago by • 0 • written 4.4 years ago by • 0
0
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0
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516
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what should be the input for SingleR() automatic cell type annotation?
SingleR
10 months ago Yijing • 0
0
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1
reply
768
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SingleR error with multiple references
SingleR
updated 11 months ago by • 0 • written 17 months ago by • 0
2
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2
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2.5k
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After having the output from SingleR for cell type annotation, what's the next step to assign the cell type to each cluster
SingleCellSignalR SingleCellWorkflow SingleR
updated 5 months ago by ★ 1.5k • written 2.9 years ago by ▴ 10
12 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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