Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
SmallRNA
•
reset
2
votes
10
replies
2.1k
views
DEseq normalization Small RNA-seq data using rRNA
deseq2
normalization
smallrna
ribosomal rna
7.5 years ago
mosharrofgeb
▴ 10
0
votes
1
reply
2.0k
views
DESeq with no replicates
Sequencing
miRNA
SmallRNA
DESeq
Sequencing
miRNA
SmallRNA
DESeq
updated 13.3 years ago by
Wolfgang Huber
★ 13k • written 13.3 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.9k
views
Is normalization in edgeR required for small RNA sequencing data?
Sequencing
SmallRNA
edgeR
Sequencing
SmallRNA
edgeR
updated 11.5 years ago by
Mark Robinson
▴ 880 • written 11.5 years ago by
Danie
▴ 40
6
votes
7
replies
1.8k
views
Normalization for small non-coding RNA
TMM
deseq2
smallrna
rnaseq
updated 5.3 years ago by
António Miguel de Jesus Domingues
▴ 490 • written 5.3 years ago by
Konstantinos Yeles
▴ 80
0
votes
1
reply
1.8k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription
Sequencing
miRNA
SmallRNA
Annotation
Normalization
GO
Cancer
Organism
edgeR
updated 11.5 years ago by
Steve Lianoglou
★ 13k • written 11.5 years ago by
Weng Khong LIM
▴ 10
0
votes
3
replies
1.6k
views
finding differential expression pattern between paired columns of data frame.
Sequencing
SmallRNA
Microarray
limma
Sequencing
SmallRNA
Microarray
limma
updated 9.7 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Jakub Stanislaw Nowak
▴ 70
3
votes
7
replies
1.4k
views
small dimensions in the matrix of counts from smallRNA using DESEq2
matrix
DESeq2
SmallRNA
dimensions
small
2.6 years ago
andreia
▴ 10
2
votes
0
replies
1.2k
views
Job:
PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna
riboseq
smallrna
differential gene expression
Job
6.0 years ago
Andy Lynch
▴ 120
0
votes
2
replies
1.2k
views
small RNAs quantification
smallrna
counts
7.5 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.1k
views
Job:
Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer
sequencing
rnaseq
methylation
smallrna
Job
5.8 years ago
Andy Lynch
▴ 120
0
votes
1
reply
888
views
small RNA counts
counts
SmallRNA
Normalization
updated 2.3 years ago by
hauken_heyken
▴ 80 • written 2.4 years ago by
k___
▴ 30
2
votes
2
replies
661
views
Contradictory results in smallRNA differential expression analysis using DESeq2
SmallRNA
DESeq2
20 months ago
jucosie
• 0
0
votes
13
replies
589
views
Unexpected behavior of lfcShrink() function in DESeq2 analysis
DESeq2
SmallRNA
updated 29 days ago by
Michael Love
41k • written 5 weeks ago by
r.r.bioinf
• 0
13 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea fork
by
Sofa
• 0
Workshops and summer schools offer immersive learning experiences outside traditional academic settings, catering to diverse interests and …
Comment: limma models out of memory issue on Slurm HPC
by
SamGG
▴ 330
> Alternatively you could run each linear model fit (var1 to var6) in a separate batch run, and again that would presumably work. I think …
Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Ankit
▴ 20
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Locations
• All
UPF, Barcelona, Spain,
2 minutes ago
United States,
2 minutes ago
France,
12 minutes ago
St Louis, MO,
12 minutes ago
Ukraine,
12 minutes ago
Traffic: 821 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6