Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Software
•
reset
1
vote
8
replies
1.4k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.0 years ago by
shepherl
3.8k
0
votes
8
replies
2.1k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation
software
software error
updated 7.8 years ago by
Julie Zhu
★ 4.3k • written 7.8 years ago by
mousheng xu
▴ 10
3
votes
6
replies
1.1k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 12 months ago by
darrelvanhoy
• 0 • written 13 months ago by
shepherl
3.8k
0
votes
5
replies
1.2k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.5 years ago • updated 23 months ago
shepherl
3.8k
2
votes
4
replies
1.2k
views
Bioconductor package development
package
R
software
development
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Dany
• 0
2
votes
3
replies
2.8k
views
package for sex determination using sam/bam files
software
sex
package
8.5 years ago
Pau Marc Muñoz Torres
▴ 20
0
votes
3
replies
983
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 3.9 years ago by
kayla.interdonato
▴ 160 • written 4.0 years ago by
shepherl
3.8k
1
vote
3
replies
1.5k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.4 years ago by
Dan Tenenbaum
★ 8.2k • written 8.4 years ago by
MarcinKosiński
• 0
0
votes
3
replies
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.8 years ago
shepherl
3.8k
0
votes
2
replies
755
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 3.6 years ago by
shepherl
3.8k • written 3.6 years ago by
gnanaprakash.s
• 0
1
vote
2
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.5 years ago • updated 3.4 years ago
shepherl
3.8k
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.3 years ago • updated 2.9 years ago
shepherl
3.8k
0
votes
2
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.5 years ago • updated 4.4 years ago
shepherl
3.8k
2
votes
2
replies
986
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
4.4 years ago
shepherl
3.8k
0
votes
2
replies
267
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
28 days ago • updated 16 days ago
shepherl
3.8k
0
votes
2
replies
780
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation
software
TxDb
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
AmalAbdel-Aziz
• 0
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
Jamal
• 0
1
vote
1
reply
1.0k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 4.3 years ago by
anamaria
▴ 10 • written 4.3 years ago by
jol.espinoz
▴ 40
0
votes
1
reply
823
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.2 years ago
shepherl
3.8k
0
votes
1
reply
829
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
4.9 years ago • updated 4.8 years ago
shepherl
3.8k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.1 years ago
shepherl
3.8k
0
votes
1
reply
147
views
News:
Bioconductor 3.19 Release Schedule
Release
release
Software
23 days ago • updated 2 days ago
shepherl
3.8k
5
votes
1
reply
384
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 5 months ago by
shepherl
3.8k
0
votes
1
reply
999
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.7 years ago • updated 4.6 years ago
shepherl
3.8k
0
votes
1
reply
384
views
Generate false reads for testing
mgu74bv2cdf
Software
Alignment
updated 9 months ago by
James W. MacDonald
65k • written 10 months ago by
Franck RICHARD
• 0
0
votes
1
reply
1.1k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
5.2 years ago
shepherl
3.8k
2
votes
1
reply
897
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq
microbiome
Software
updated 6 months ago by
ATpoint
★ 4.0k • written 6 months ago by
HULFRED
▴ 10
4
votes
0
replies
903
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.4 years ago
shepherl
3.8k
0
votes
0
replies
1.9k
views
Job:
Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
software
engineer
bioinformatician job
Job
9.4 years ago
Doe, Aimee
▴ 40
0
votes
0
replies
1.0k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
5.9 years ago
shepherl
3.8k
0
votes
0
replies
722
views
Job:
Software Developer - BC Cancer Research Center, Vancouver BC
software
bioinformatics
sequecing
Job
4.8 years ago
jmaanaki
• 0
0
votes
0
replies
816
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.6 years ago • updated 4.5 years ago
shepherl
3.8k
2
votes
0
replies
2.3k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
4.5 years ago
Laurent Gatto
1.6k
6
votes
0
replies
824
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.4 years ago
shepherl
3.8k
0
votes
0
replies
847
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.4 years ago
shepherl
3.8k
0
votes
0
replies
738
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.1 years ago
shepherl
3.8k
4
votes
0
replies
777
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
3.9 years ago
shepherl
3.8k
0
votes
0
replies
787
views
News:
List of Deprecated Packages for Bioc3.12
deprecated
experiment data
software
annotation
News
3.8 years ago
shepherl
3.8k
3
votes
0
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.12
annotation
software
experiment data
deprecated
News
3.6 years ago • updated 3.5 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
3.4 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.5k
views
News:
The NIH Software Discovery Index | We invite your comments
software
NIH
index
News
9.5 years ago
Sean Davis
21k
0
votes
0
replies
545
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
11 months ago
shepherl
3.8k
8
votes
0
replies
855
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.4 years ago
shepherl
3.8k
0
votes
0
replies
582
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
24 months ago
shepherl
3.8k
0
votes
0
replies
827
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
2.5 years ago
Daniel
• 0
5
votes
0
replies
996
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago • updated 2.8 years ago
shepherl
3.8k
0
votes
0
replies
676
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
17 months ago
shepherl
3.8k
8
votes
0
replies
802
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
23 months ago
shepherl
3.8k
0
votes
0
replies
516
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
12 months ago
shepherl
3.8k
0
votes
0
replies
720
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
16 months ago
Robert Castelo
★ 3.1k
50 results • Page
1 of 1
Recent ...
Replies
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
Answer: Differing results from plotMDS and PCAtools
by
Gordon Smyth
50k
The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Ankit
▴ 20
Popular Question
to
michael.s
• 0
Popular Question
to
James W. MacDonald
65k
Popular Question
to
Pierre Lindenbaum
▴ 10
Locations
• All
India,
1 minute ago
Australia,
10 minutes ago
Italy,
13 minutes ago
France,
17 minutes ago
Melbourne, Australia,
25 minutes ago
Traffic: 706 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6