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Software
•
reset
2
votes
3
replies
2.8k
views
package for sex determination using sam/bam files
software
sex
package
8.5 years ago
Pau Marc Muñoz Torres
▴ 20
2
votes
0
replies
2.3k
views
Job:
Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics
genomics
transcriptomics
software
Job
4.6 years ago
Laurent Gatto
1.6k
0
votes
8
replies
2.1k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation
software
software error
updated 7.8 years ago by
Julie Zhu
★ 4.3k • written 7.9 years ago by
mousheng xu
▴ 10
0
votes
0
replies
1.9k
views
Job:
Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
software
engineer
bioinformatician job
Job
9.5 years ago
Doe, Aimee
▴ 40
0
votes
2
replies
1.6k
views
News:
Final List of Deprecated Packages for Bioc3.10
annotation
experimentdata
deprecation
release
software
News
4.6 years ago • updated 4.4 years ago
shepherl
3.8k
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software
bioc-devel
developers
R
updated 8.5 years ago by
Dan Tenenbaum
★ 8.2k • written 8.5 years ago by
MarcinKosiński
• 0
2
votes
2
replies
1.5k
views
News:
Final List of Deprecated Packages for Bioc3.13
Workflow
Software
ExperimentData
Deprecation
3.4 years ago • updated 3.0 years ago
shepherl
3.8k
0
votes
0
replies
1.5k
views
News:
The NIH Software Discovery Index | We invite your comments
software
NIH
index
News
9.6 years ago
Sean Davis
21k
1
vote
8
replies
1.5k
views
News:
Final List of Deprecated Package Bioc 3.9
deprecation
release
software
experimentData
News
written 5.1 years ago by
shepherl
3.8k
3
votes
0
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.12
annotation
software
experiment data
deprecated
News
3.6 years ago
shepherl
3.8k
1
vote
2
replies
1.4k
views
News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
experimentdata
deprecated
News
3.5 years ago
shepherl
3.8k
0
votes
5
replies
1.3k
views
News:
Final List of Deprecated Packages for Bioc3.14
ExperimentData
Deprecation
Software
Release
Workflow
2.5 years ago • updated 2.0 years ago
shepherl
3.8k
0
votes
1
reply
1.2k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
devel
software
experimentdata
News
5.2 years ago
shepherl
3.8k
2
votes
4
replies
1.2k
views
Bioconductor package development
package
R
software
development
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
Dany
• 0
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray
meta analysis
cancer
Software
R
updated 5.3 years ago by
James W. MacDonald
65k • written 5.3 years ago by
Jamal
• 0
3
votes
6
replies
1.1k
views
News:
Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software
Bioconductor
Devel
devel
updated 13 months ago by
darrelvanhoy
• 0 • written 13 months ago by
shepherl
3.8k
0
votes
1
reply
1.1k
views
News:
List of Deprecated Package Bioc 3.9
deprecate
release
software
devel
News
5.3 years ago
shepherl
3.8k
0
votes
0
replies
1.1k
views
Job:
R programmer position in genetic epidemiology/bioconductor
genetics
genomics
software
Job
3.5 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
0
replies
1.1k
views
News:
DEADLINE: All packages to pass R CMD build and R CMD check
release
software
experimentdata
workflows
News
6.0 years ago
shepherl
3.8k
1
vote
1
reply
1.1k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 4.4 years ago by
anamaria
▴ 10 • written 4.4 years ago by
jol.espinoz
▴ 40
0
votes
3
replies
1.1k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.9 years ago
shepherl
3.8k
0
votes
1
reply
1.0k
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
deprecation
release
News
4.7 years ago • updated 4.6 years ago
shepherl
3.8k
5
votes
0
replies
1.0k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
2.9 years ago
shepherl
3.8k
2
votes
2
replies
1.0k
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
4.5 years ago
shepherl
3.8k
0
votes
3
replies
1.0k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.0 years ago by
kayla.interdonato
▴ 160 • written 4.1 years ago by
shepherl
3.8k
2
votes
1
reply
986
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq
microbiome
Software
updated 7 months ago by
ATpoint
★ 4.0k • written 7 months ago by
HULFRED
▴ 10
4
votes
0
replies
932
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.5 years ago
shepherl
3.8k
8
votes
0
replies
882
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.5 years ago
shepherl
3.8k
0
votes
0
replies
872
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.4 years ago
shepherl
3.8k
0
votes
1
reply
858
views
News:
Initial List of Deprecated Packages Bioc 3.10
software
experimentdata
release
deprecation
annotation
News
5.0 years ago • updated 4.9 years ago
shepherl
3.8k
6
votes
0
replies
847
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.5 years ago
shepherl
3.8k
0
votes
1
reply
847
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.3 years ago
shepherl
3.8k
0
votes
0
replies
845
views
Job:
Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data
immunology
software
vaccinology
2.6 years ago
Daniel
• 0
0
votes
0
replies
844
views
News:
List of Deprecated Packages Bioc 3.10
annotation
experimentdata
software
release
deprecation
News
4.6 years ago
shepherl
3.8k
8
votes
0
replies
844
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
24 months ago
shepherl
3.8k
0
votes
0
replies
810
views
News:
List of Deprecated Packages for Bioc3.12
deprecated
experiment data
software
annotation
News
3.9 years ago
shepherl
3.8k
0
votes
2
replies
806
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation
software
TxDb
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
AmalAbdel-Aziz
• 0
4
votes
0
replies
804
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
4.0 years ago
shepherl
3.8k
1
vote
0
replies
783
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
17 months ago
shepherl
3.8k
0
votes
2
replies
780
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software
annotation
experiment
workflow
updated 3.7 years ago by
shepherl
3.8k • written 3.7 years ago by
gnanaprakash.s
• 0
0
votes
0
replies
767
views
News:
List of Deprecated Packages Bioc 3.11
annotation
experimentdata
software
release
deprecation
News
4.2 years ago
shepherl
3.8k
0
votes
0
replies
756
views
Job:
Research software engineer at UPF Barcelona
JobPosting
Devel
GSVA
Software
17 months ago
Robert Castelo
★ 3.3k
0
votes
0
replies
739
views
Job:
Software Developer - BC Cancer Research Center, Vancouver BC
software
bioinformatics
sequecing
Job
4.9 years ago
jmaanaki
• 0
0
votes
0
replies
706
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release
Devel
Bioconductor
Software
18 months ago
shepherl
3.8k
0
votes
7
replies
610
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 1 day ago
shepherl
3.8k
0
votes
0
replies
607
views
News:
New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release
Software
Bioconductor
Devel
2.1 years ago
shepherl
3.8k
0
votes
0
replies
584
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
12 months ago
shepherl
3.8k
0
votes
0
replies
545
views
News:
Bioconductor 3.17 Release Schedule
Softwar
Release
Bioconductor
release
Software
13 months ago
shepherl
3.8k
5
votes
1
reply
419
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.8k
0
votes
1
reply
405
views
Generate false reads for testing
mgu74bv2cdf
Software
Alignment
updated 10 months ago by
James W. MacDonald
65k • written 10 months ago by
Franck RICHARD
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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