Bioconductor Spatial

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629

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Proteomics JobPosting SingleCell Spatial SpatialExperiment

10 months ago Peter Hickey ▴ 750

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1.1k

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omics Spatial postdoc

22 months ago Wolfgang Huber ★ 13k

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926

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pRoloc proteomics Spatial Proteomics MassSpectrometry

23 months ago Laurent Gatto 1.6k

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888

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SingleCell Spatial RNA-seq

23 months ago Jenny Drnevich ★ 2.0k

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868

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SingleCell rnaseq methylationArrayAnalysis Spatial

written 2.1 years ago by Jenny Drnevich ★ 2.0k

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Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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