Bioconductor SpikeIn

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DiffBind Errorinsocketconnection SpikeIn

3 days ago Virangika • 0

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575

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SpikeIn DiffBind

13 months ago Weisheng • 0

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1.7k

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DESeq2 SpikeIn Normalization DifferentialExpression

updated 14 months ago by ATpoint ★ 4.0k • written 14 months ago by kalavattam ▴ 10

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1.2k

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DESeq2 SpikeIn Normalization

updated 15 months ago by Michael Love 41k • written 15 months ago by kalavattam ▴ 10

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1.6k

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DiffBind SpikeIn Normalization ChIP-seq csaw

16 months ago • updated 15 months ago spg • 0

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888

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DiffBind ChIPSeq Normalization SpikeIn

2.5 years ago Drew • 0

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688

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SpikeIn SingleCell

2.7 years ago mb1996 • 0

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1.1k

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ChIPSeq SpikeIn edgeR Normalization

2.7 years ago maria.soler • 0

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3.7k

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edgeR SpikeIn RNASeq

updated 6 months ago by Miguel • 0 • written 3.1 years ago by robert.chen • 0

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2.9k

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CUTandRUN edgeR Normalization SpikeIn ChIPSeq

updated 16 months ago by Bogdan ▴ 670 • written 3.5 years ago by Hesh ▴ 10

10 results • Page 1 of 1

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Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

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Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Awards • All

Scholar to Peter Hickey ▴ 740