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Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
updated 14 months ago by
ATpoint
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written 14 months ago by
kalavattam
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updated 15 months ago by
Michael Love
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written 15 months ago by
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mb1996
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Comment: Differential peaks that were not identified in diffbind were identified in diseq
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lonn
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Thank you for your suggestions! Here is the MA plot:
![enter image description here][1]
I tried several normalization methods with DiffBi…
Answer: OrgDb for maize
by
Guido Hooiveld
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3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
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240
They are reorder in the decreasing order.
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