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Splatter
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0
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3
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2.0k
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Trouble installing splatter
installation
splatter
6.9 years ago
luke.zappia
▴ 50
4
votes
2
replies
935
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago
Brian Haas
▴ 90
3
votes
3
replies
2.3k
views
is SCEset fully abandoned in scran?
scran
scater
splatter
normalization
updated 6.5 years ago by
davis
▴ 90 • written 6.5 years ago by
wt215
• 0
0
votes
1
reply
1.1k
views
Control group size
splatter
6.4 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.4 years ago
luke.zappia
▴ 50
0
votes
1
reply
872
views
Simulating paths returns identical values
splatter
6.0 years ago
luke.zappia
▴ 50
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter
single cell
6.0 years ago
nikolaspapadop
▴ 10
5
votes
2
replies
1.6k
views
Accessing normalized counts
splatter
singlecellexperiment
scater
6.0 years ago
luke.zappia
▴ 50
1
vote
1
reply
957
views
Any pointers on simulating cell outliers?
splatter
simulation
5.9 years ago
luke.zappia
▴ 50
0
votes
5
replies
1.2k
views
How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter
Splatter
updated 5.2 years ago by
luke.zappia
▴ 50 • written 5.2 years ago by
chenxofhit
• 0
0
votes
1
reply
643
views
change values on Differential Expression parameters
splatter
updated 4.5 years ago by
luke.zappia
▴ 50 • written 4.5 years ago by
jp3770
• 0
0
votes
1
reply
714
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by
luke.zappia
▴ 50 • written 3.7 years ago by
olympia.hardy13
• 0
0
votes
1
reply
952
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 23 months ago by
luke.zappia
▴ 50 • written 24 months ago by
Fatima
• 0
0
votes
1
reply
908
views
Robustness of Splat cell grouping
splatter
6.9 years ago
luke.zappia
▴ 50
1
vote
2
replies
824
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment
splatter
2.4 years ago
Fatima
• 0
0
votes
2
replies
874
views
I cannot install the splatter on colab
splatter
biocmanager
written 3.1 years ago by
Tianyu
• 0
16 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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