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Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Hervé Pagès
16k
Got it. Yeah I guess having a `strandMode` parameter for `readGAlignmentsList()` would help handle this.
@Robert: Do you want to open an i…
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
James W. MacDonald
62k
One reason to use a GAlignmentsList object is if you have 'too many' unpaired reads for some reason and you want to recover them. And it's …
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Hervé Pagès
16k
Hi Robert,
Just to clarify, a GAlignmentsList object represents a list of GAlignments objects, in the same way that a GRangesList object r…
Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
James W. MacDonald
62k
Does this work?
```
> tmp <- tempfile("whatevs")
> download.file("ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2pubmed.gz", tmp, mode = "wb")
…
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