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SpliceR
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reset
1
vote
5
replies
1.7k
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using BitSeq data as input for spliceR
bitseq
spliceR
8.9 years ago
elle
▴ 10
2
votes
4
replies
2.0k
views
Error in SpliceR and GTF file issue
SpliceR
Cuffdiff
updated 8.6 years ago by
deppt002
• 0 • written 8.8 years ago by
mfahim
• 0
0
votes
1
reply
958
views
missing values (NA) in spliceR results
splicer
rnaseq
updated 8.8 years ago by
k.vitting.seerup
▴ 120 • written 9.5 years ago by
hliang
▴ 20
0
votes
1
reply
1.3k
views
Extract sequences corresponding to TCONS IDs from spliceR
splicer
updated 6.2 years ago by
k.vitting.seerup
▴ 120 • written 6.2 years ago by
aditi
▴ 20
1
vote
1
reply
1.4k
views
Running cufflinks for spliceR
Annotation
spliceR
Annotation
spliceR
updated 8.8 years ago by
k.vitting.seerup
▴ 120 • written 9.6 years ago by
hliang
▴ 20
0
votes
1
reply
1.2k
views
results from spliceR
spliceR
updated 8.8 years ago by
k.vitting.seerup
▴ 120 • written 9.0 years ago by
knight2ni
• 0
0
votes
4
replies
1.5k
views
browserSession for Arabidopsis
rtracklayer
Granges
spliceR
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
mfahim
• 0
1
vote
3
replies
1.7k
views
spliceR error with GTF cummeRbund input
splicer
cummerbund
updated 6.7 years ago by
lmanchon
• 0 • written 7.8 years ago by
weisbeal
▴ 10
0
votes
0
replies
1.5k
views
Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
8.9 years ago
elle
▴ 10
9 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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