Bioconductor Splicing

Showing : Splicing • reset

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195

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splicing limma edgeR

updated 25 days ago by Gordon Smyth 50k • written 25 days ago by scoops_streams_06 • 0

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481

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transcriptome splicing assembly

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Marianna ▴ 20

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815

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splicing Exon featureCounts subread DEXSeq

23 months ago • updated 22 months ago NIK • 0

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674

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

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2.1k

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edger normalization differential exon usage splicing

updated 3.5 years ago by Yunshun Chen ▴ 840 • written 3.5 years ago by oakhamwolf • 0

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1.1k

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DEXSeq Splicing Exon Usage

4.2 years ago gunjan.dikshit • 0

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1.1k

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ciri splicing splicesites

updated 4.2 years ago by lhddiallo • 0 • written 5.9 years ago by csijst • 0

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810

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junctionseq splicing RNAseq DEXSeq

4.4 years ago stuart ▴ 10

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1.5k

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genomicalignments splicing coverage

updated 4.5 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by rasi1983 ▴ 10

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877

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dexseq splicing sqtl qtl

updated 5.2 years ago by Alejandro Reyes ★ 1.9k • written 5.2 years ago by rtunney2 • 0

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1.7k

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deseq2 splicing

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by yannickwurm • 0

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1.5k

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DRIMSeq splicing differential isoform usage

updated 7.2 years ago by Gosia Nowicka ▴ 90 • written 7.2 years ago by kristoffer.vittingseerup ▴ 20

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2.6k

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sgseq splicing alternative splicing

updated 8.1 years ago by Leonard Goldstein ▴ 170 • written 8.1 years ago by vakul.mohanty ▴ 10

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1.7k

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microarray splicing

updated 8.2 years ago by Sonika Tyagi ▴ 20 • written 9.5 years ago by gv ▴ 40

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1.5k

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DEXSeq splicing python SAM

8.5 years ago Fiona ▴ 70

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2.1k

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SGSeq analyzeFeatures Splicing

9.3 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

Recent ...

Replies

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Answer: blockwiseModule crashes in the end and doesn't generate modules by xaweh28128 • 0

Test your word skills and see if you can crack the code in today's Wordle puzzle. [Nytimes wordle](https://wordlenytimes.net/quordle-game/)…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Answer: Differentially expressed genes in monocle pseudotime by Gordon Smyth 50k

You might try the methods in this paper: Cheng J, Smyth GK*, Chen Y* (2023). Unraveling the timeline of gene expression: A pseudotempora…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Votes

Comment: Not fully paired differential gene expression analysis

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

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