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Splicing
•
reset
1
vote
6
replies
2.1k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
9.4 years ago • updated 9.3 years ago
Paolo Guarnieri
▴ 20
1
vote
3
replies
1.7k
views
Microarray data analysis for detecting alternative splicing
microarray
splicing
updated 8.2 years ago by
Sonika Tyagi
▴ 20 • written 9.5 years ago by
gv
▴ 40
1
vote
2
replies
1.5k
views
Coverage function assigns wrong weights for gapped alignments
genomicalignments
splicing
coverage
updated 4.5 years ago by
Michael Lawrence
★ 11k • written 7.1 years ago by
rasi1983
▴ 10
2
votes
2
replies
1.7k
views
Deseq2 alternative splicing in understudied organism
deseq2
splicing
updated 6.0 years ago by
Michael Love
41k • written 6.0 years ago by
yannickwurm
• 0
0
votes
1
reply
1.1k
views
About CIRI's output
ciri
splicing
splicesites
updated 4.2 years ago by
lhddiallo
• 0 • written 5.9 years ago by
csijst
• 0
0
votes
1
reply
879
views
Can DEXseq be used for splicing QTL analysis?
dexseq
splicing
sqtl
qtl
updated 5.2 years ago by
Alejandro Reyes
★ 1.9k • written 5.2 years ago by
rtunney2
• 0
0
votes
1
reply
490
views
Transcriptome assembly: single individual or pooled samples
transcriptome
splicing
assembly
updated 17 months ago by
James W. MacDonald
65k • written 17 months ago by
Marianna
▴ 20
3
votes
16
replies
2.6k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.1 years ago by
Leonard Goldstein
▴ 170 • written 8.1 years ago by
vakul.mohanty
▴ 10
1
vote
2
replies
1.5k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 7.2 years ago by
Gosia Nowicka
▴ 90 • written 7.2 years ago by
kristoffer.vittingseerup
▴ 20
2
votes
7
replies
2.2k
views
EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
edger
normalization
differential exon usage
splicing
updated 3.5 years ago by
Yunshun Chen
▴ 840 • written 3.5 years ago by
oakhamwolf
• 0
0
votes
1
reply
214
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 4 weeks ago by
Gordon Smyth
50k • written 4 weeks ago by
scoops_streams_06
• 0
0
votes
0
replies
1.5k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
8.5 years ago
Fiona
▴ 70
0
votes
0
replies
677
views
Psichomics Suppa Input issue
psichomics
SUPPA
Splicing
Alternative Splicing
Retained Introns
3.5 years ago
noahhelton98
▴ 20
0
votes
1
reply
823
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
23 months ago
NIK
• 0
0
votes
1
reply
817
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
4.4 years ago
stuart
▴ 10
0
votes
3
replies
1.1k
views
DEXSeq Splicing Result with incomplete lines between exons
DEXSeq
Splicing
Exon Usage
4.2 years ago
gunjan.dikshit
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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