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Showing :
Splicing
•
reset
1
vote
6
replies
2.5k
views
SGSeq error on analyzeFeatures
SGSeq
analyzeFeatures
Splicing
10.1 years ago
Paolo Guarnieri
▴ 20
1
vote
3
replies
2.0k
views
Microarray data analysis for detecting alternative splicing
microarray
splicing
updated 9.0 years ago by
Sonika Tyagi
▴ 20 • written 10.3 years ago by
gv
▴ 40
1
vote
2
replies
1.8k
views
Coverage function assigns wrong weights for gapped alignments
genomicalignments
splicing
coverage
updated 5.3 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
rasi1983
▴ 10
2
votes
2
replies
2.0k
views
Deseq2 alternative splicing in understudied organism
deseq2
splicing
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
yannickwurm
• 0
0
votes
1
reply
1.3k
views
About CIRI's output
ciri
splicing
splicesites
updated 5.0 years ago by
lhddiallo
• 0 • written 6.7 years ago by
csijst
• 0
0
votes
1
reply
1.1k
views
Can DEXseq be used for splicing QTL analysis?
dexseq
splicing
sqtl
qtl
updated 6.0 years ago by
Alejandro Reyes
★ 1.9k • written 6.0 years ago by
rtunney2
• 0
0
votes
1
reply
728
views
Transcriptome assembly: single individual or pooled samples
transcriptome
splicing
assembly
updated 2.2 years ago by
James W. MacDonald
68k • written 2.2 years ago by
Marianna
▴ 20
5
votes
16
replies
3.1k
views
Read counts generated by SGSeq are always 0
sgseq
splicing
alternative splicing
updated 8.9 years ago by
Leonard Goldstein
▴ 260 • written 8.9 years ago by
vakul.mohanty
▴ 20
1
vote
2
replies
1.8k
views
Is it possible to get Isoform-level differential isoform usage form DRIMSeq?
DRIMSeq
splicing
differential isoform usage
updated 8.0 years ago by
Gosia Nowicka
▴ 90 • written 8.0 years ago by
kristoffer.vittingseerup
▴ 20
2
votes
7
replies
3.0k
views
EdgeR diffSpliceDGE: Obtaining exon-level counts and normalisation step
edger
normalization
differential exon usage
splicing
updated 4.3 years ago by
Yunshun Chen
▴ 900 • written 4.3 years ago by
oakhamwolf
• 0
0
votes
1
reply
685
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 10 months ago by
Gordon Smyth
52k • written 10 months ago by
scoops_streams_06
• 0
0
votes
0
replies
1.7k
views
DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
DEXSeq
splicing
python
SAM
9.3 years ago
Fiona
▴ 70
0
votes
0
replies
894
views
Psichomics Suppa Input issue
psichomics
SUPPA
Splicing
Alternative Splicing
Retained Introns
4.3 years ago
noahhelton98
▴ 20
0
votes
1
reply
1.1k
views
DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
2.7 years ago
NIK
• 0
0
votes
1
reply
1.0k
views
JunctionSeq producing strangely large effect sizes for certain exon counting bins
junctionseq
splicing
RNAseq
DEXSeq
5.2 years ago
stuart
▴ 10
0
votes
3
replies
1.4k
views
DEXSeq Splicing Result with incomplete lines between exons
DEXSeq
Splicing
Exon Usage
5.0 years ago
gunjan.dikshit
• 0
16 results • Page
1 of 1
Recent ...
Replies
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status
by
Renuka
• 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
James W. MacDonald
68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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