Biostar Splicing

Showing : Splicing • reset

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1.8k

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sgseq splicing alternative splicing

updated 6.9 years ago by Leonard Goldstein ▴ 150 • written 6.9 years ago by vakul.mohanty ▴ 10

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1.6k

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SGSeq analyzeFeatures Splicing

8.1 years ago Paolo Guarnieri ▴ 20

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1.4k

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microarray splicing

updated 7.0 years ago by Sonika Tyagi ▴ 20 • written 8.3 years ago by gv ▴ 40

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1.3k

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edger normalization differential exon usage splicing

updated 2.3 years ago by Yunshun Chen ▴ 780 • written 2.3 years ago by oakhamwolf • 0

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1.2k

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deseq2 splicing

updated 4.8 years ago by Michael Love 39k • written 4.8 years ago by yannickwurm • 0

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1.1k

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DRIMSeq splicing differential isoform usage

updated 6.0 years ago by Gosia Nowicka ▴ 90 • written 6.0 years ago by kristoffer.vittingseerup ▴ 20

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1.1k

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genomicalignments splicing coverage

updated 3.3 years ago by Michael Lawrence 11k • written 5.8 years ago by rasi1983 ▴ 10

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1.1k

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DEXSeq splicing python SAM

7.3 years ago Fiona ▴ 70

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782

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ciri splicing splicesites

updated 3.0 years ago by lhddiallo • 0 • written 4.7 years ago by csijst • 0

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645

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DEXSeq Splicing Exon Usage

3.0 years ago gunjan.dikshit • 0

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602

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dexseq splicing sqtl qtl

updated 4.0 years ago by Alejandro Reyes ★ 1.8k • written 4.0 years ago by rtunney2 • 0

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489

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junctionseq splicing RNAseq DEXSeq

3.2 years ago stuart ▴ 10

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368

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

2.3 years ago noahhelton98 ▴ 20

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303

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splicing Exon featureCounts subread DEXSeq

8 months ago NIK • 0

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transcriptome splicing assembly

updated 11 weeks ago by James W. MacDonald 62k • written 11 weeks ago by Marianna • 0

15 results • Page 1 of 1

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Comment: Which input file is used for DGEList in EgdeR? by mohammedtoufiq91 ▴ 10

Thank you @gordonsmyth My collaborator asked me to test this pipeline with `egdeR` package. We are interested at gene level analysis only…

Answer: Why in Bioconductor community people rarely upvote questions? by Gordon Smyth 47k

I think it is a good idea to start a discussion with correct information. Looking back through Bioconductor Support records, it is not at a…

Comment: How to identify top most variable genes from log2 normalized data? by Gordon Smyth 47k

Your code doesn't look right to me. I think you're using order() where sort() would be more appropriate. To order your cpm matrix by row v…

Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0

> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…

Answer: Which input file is used for DGEList in EgdeR? by Gordon Smyth 47k

I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…

Votes

Answer: Which input file is used for DGEList in EgdeR?

Answer: Identifying DEGs using lfcshrink()

Answer: Is this DESeq2 interactions design correct?

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Awards • All

Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k