Bioconductor Splicing

Showing : Splicing • reset

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3.2k

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sgseq splicing alternative splicing

updated 9.1 years ago by Leonard Goldstein ▴ 260 • written 9.1 years ago by vakul.mohanty ▴ 20

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3.2k

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edger normalization differential exon usage splicing

updated 4.4 years ago by Yunshun Chen ▴ 900 • written 4.5 years ago by oakhamwolf • 0

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2.1k

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deseq2 splicing

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by yannickwurm • 0

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1.8k

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DRIMSeq splicing differential isoform usage

updated 8.2 years ago by Gosia Nowicka ▴ 90 • written 8.2 years ago by kristoffer.vittingseerup ▴ 20

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2.0k

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microarray splicing

updated 9.2 years ago by Sonika Tyagi ▴ 20 • written 10.4 years ago by gv ▴ 40

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1.8k

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genomicalignments splicing coverage

updated 5.5 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by rasi1983 ▴ 10

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2.5k

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SGSeq analyzeFeatures Splicing

10.3 years ago Paolo Guarnieri ▴ 20

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1.2k

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splicing Exon featureCounts subread DEXSeq

2.8 years ago NIK • 0

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797

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splicing limma edgeR

updated 12 months ago by Gordon Smyth 52k • written 12 months ago by scoops_streams_06 • 0

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758

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transcriptome splicing assembly

updated 2.4 years ago by James W. MacDonald 68k • written 2.4 years ago by Marianna ▴ 20

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1.7k

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DEXSeq splicing python SAM

9.5 years ago Fiona ▴ 70

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1.3k

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ciri splicing splicesites

updated 5.2 years ago by lhddiallo • 0 • written 6.9 years ago by csijst • 0

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1.1k

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dexseq splicing sqtl qtl

updated 6.2 years ago by Alejandro Reyes ★ 1.9k • written 6.2 years ago by rtunney2 • 0

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1.1k

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junctionseq splicing RNAseq DEXSeq

5.3 years ago stuart ▴ 10

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1.5k

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DEXSeq Splicing Exon Usage

5.1 years ago gunjan.dikshit • 0

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935

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.4 years ago noahhelton98 ▴ 20

16 results • Page 1 of 1

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Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Mike Smith ★ 6.6k

Tricky to try and debug this without some example files to work with. Can you provide the output of `traceback()` called immediately after…

Answer: Mismatch between Illumina Mouse Methylation BeadChip annotation and genome brows by James W. MacDonald 68k

The annotation data that is provided for this array is simply a repackaging of data that we get from Illumina, so any apparent inconsistenc…

Answer: Package developing and interoperation with Bioconductor by James W. MacDonald 68k

Ideally you would have S4 methods that dispatch on the incoming data structure, so people could call your main function using a `data.frame…

Comment: ComBat with repeated measures by ATpoint ★ 4.8k

It looks to me that you do not need the batch information since subject is nested with batch so correcting for subject will do a paired ana…

Comment: Surprising behavior for DEXseq dispersion estimate plot? by ATpoint ★ 4.8k

You realize this is a spam bot talking to you?

Votes

Answer: Package developing and interoperation with Bioconductor

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?

Answer: Explannation for ROAST results

A: How DiffBind run PCA based on peak data?

Looking for equivalent EPIC chip v1 vs. v2 annotation variables

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