Bioconductor StageR

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1.2k

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DESeq2 stageR

4 months ago alephreish • 0

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596

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DEXSeq stageR

13 months ago jbono ▴ 10

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726

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stageR

updated 3.1 years ago by Koen Van den Berge ▴ 180 • written 3.2 years ago by giwa.ao • 0

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998

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DRIMSeq stageR

updated 5.7 years ago by Koen Van den Berge ▴ 180 • written 5.7 years ago by sdvie • 0

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.8 years ago d-joester ▴ 20

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1.5k

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limma stageR decideTests

updated 5.9 years ago by Koen Van den Berge ▴ 180 • written 5.9 years ago by maltethodberg ▴ 180

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1.3k

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drimseq rnaseqdtu stager

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by Jack.Hearn • 0

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by rbenel ▴ 40

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2.1k

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drimseq stageR dtu salmon rna seq

updated 6.4 years ago by Koen Van den Berge ▴ 180 • written 6.4 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

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