Bioconductor StageR

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1.4k

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drimseq stageR dtu salmon rna seq

updated 5.2 years ago by Koen Van den Berge ▴ 180 • written 5.2 years ago by fiona.dick91 ▴ 60

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1.2k

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DEXSeq StageR rnaseqDTU

updated 4.9 years ago by Michael Love 40k • written 5.0 years ago by rbenel ▴ 30

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855

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drimseq rnaseqdtu stager

updated 4.8 years ago by Michael Love 40k • written 4.8 years ago by Jack.Hearn • 0

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995

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limma stageR decideTests

updated 4.7 years ago by Koen Van den Berge ▴ 180 • written 4.7 years ago by maltethodberg ▴ 170

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1.4k

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stageR rnaseqDTU DRIMSeq DEXSeq

4.7 years ago d-joester ▴ 20

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671

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DRIMSeq stageR

updated 4.6 years ago by Koen Van den Berge ▴ 180 • written 4.6 years ago by sdvie • 0

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423

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stageR

updated 23 months ago by Koen Van den Berge ▴ 180 • written 24 months ago by giwa.ao • 0

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Comment: shinyMethyl - saving the file by dorota.komar • 0

I tried printing the page as pdf, unfortunately I get the same problem. I guess for now, I will need to save the graphs separately :) Than…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by Mike Smith ★ 6.1k

I'll echo James' suggestion to use the GRCh37 mirror. Most mirrors only have a guaranteed lifetime of 5 years from Ensembl, although it se…

Comment: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

I should also point out that you can find this out by yourself by going to [ensembl][1], clicking on the Biomart link, and then scrolling t…

Answer: biomaRt code/getBM function no longer importing 'coding' sequence via seqType ar by James W. MacDonald 63k

It's my understanding that the archived Biomart data are not complete, which is likely why you cannot get sequences. But you apparently jus…

Comment: ComBat_seq function in sva package does not return a matrix by Federico ▴ 10

Thanks for your help, problem solved :)

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ComBat_seq function in sva package does not return a matrix

Answer: ComBat_seq function in sva package does not return a matrix

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Teacher to ATpoint ★ 3.4k