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Further analysis after limma regression output
statistics Epigenetics limma
updated 13 hours ago by 63k • written 23 hours ago by ▴ 10
1
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1
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483
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 5 months ago by ★ 3.4k • written 5 months ago by • 0
0
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3
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517
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batch effect in EPIC array data
statistics Epigenetics R
updated 7 months ago by ▴ 720 • written 7 months ago by ▴ 10
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356
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
8 months ago alena.vanboemmel • 0
0
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2
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421
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 9 months ago by ★ 1.3k • written 9 months ago by • 0
1
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0
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381
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
13 months ago arisarkar88 ▴ 40
1
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0
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476
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
14 months ago Andy Lynch ▴ 120
1
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0
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416
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
14 months ago Andy Lynch ▴ 120
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6
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883
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
16 months ago Jitendra ▴ 10
0
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3
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1.1k
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 19 months ago by 21k • written 20 months ago by ▴ 10
3
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5
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1.1k
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P adjusted values in Deseq2
DESeq2 Statistics
written 2.7 years ago by • 0
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2
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743
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
23 months ago • updated 7 months ago Wolfgang Huber 13k
0
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0
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716
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
2.5 years ago • updated 2.4 years ago Luo Weijun ★ 1.6k
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731
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
2.6 years ago m.jackson • 0
0
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0
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666
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
2.7 years ago António Miguel de Jesus Domingues ▴ 490
0
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0
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826
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Job: Proteomics Bioinformatician
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2.7 years ago Laura • 0
0
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0
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699
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
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2.8 years ago • updated 2.5 years ago Luo Weijun ★ 1.6k
1
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2
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745
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.0 years ago by 40k • written 3.0 years ago by ▴ 50
2
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0
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656
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.0 years ago Johannes Rainer ★ 2.0k
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565
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.2 years ago • updated 2.9 years ago whduke • 0
0
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0
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1.7k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.2 years ago • updated 2.8 years ago Luo Weijun ★ 1.6k
1
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0
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627
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.3 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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1.9k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
3.9 years ago • updated 3.7 years ago Gordon Smyth 48k
0
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0
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1.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
4.6 years ago • updated 3.8 years ago Luo Weijun ★ 1.6k
0
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1
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538
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
3.9 years ago A • 0
0
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1
reply
567
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 3.9 years ago by 40k • written 3.9 years ago by • 0
2
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2
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2.1k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.0 years ago by 48k • written 4.0 years ago by ▴ 10
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0
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760
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.1 years ago tatabox • 0
3
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3
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1.1k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.3 years ago by 40k • written 4.3 years ago by • 0
0
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1
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734
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.6 years ago naglemi ▴ 10
0
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0
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574
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package for mismatch distribution?
genetics statistics
4.7 years ago myriam.croze07 • 0
1
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6
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2.2k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 6 months ago by 40k • written 4.8 years ago by • 0
1
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2
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742
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Newbie to all of this
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4.9 years ago sportwoo • 0
8
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8
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5.6k
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Voom transformation from counts and normalization to negative values
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updated 5.0 years ago by 7.8k • written 5.0 years ago by ▴ 50
1
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2
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750
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.1 years ago by 63k • written 5.1 years ago by • 0
1
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4
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1.0k
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.1 years ago Andrea Carenzo • 0
0
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2
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862
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comparing two GOstats result lists
gostats statistics
updated 5.3 years ago by 63k • written 5.3 years ago by ▴ 20
1
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0
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923
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
5.4 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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927
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DSS DMLTest Prior Estimate of theta dispersion
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5.5 years ago floriandeckert ▴ 30
0
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0
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908
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
5.5 years ago kieranrcampbell ▴ 50
0
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0
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926
views
Two questions about pathifier package
pathways statistics microarray
5.7 years ago arronar • 0
24
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6
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8.9k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 6.0 years ago by 63k • written 6.0 years ago by ▴ 30
2
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4
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970
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.0 years ago by 13k • written 6.0 years ago by ▴ 70
0
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0
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960
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
6.0 years ago rbronste ▴ 60
0
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0
replies
1.3k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
6.6 years ago • updated 6.5 years ago Luo Weijun ★ 1.6k
1
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2
replies
1.8k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 6.5 years ago by • 0 • written 8.6 years ago by ▴ 80
0
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0
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1.1k
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
6.6 years ago radel • 0
1
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2
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2.5k
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the statistical test that DESeq2 use
deseq2 statistics
updated 6.6 years ago by 7.8k • written 6.6 years ago by • 0
2
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2
replies
6.8k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
6.8 years ago jol.espinoz ▴ 40
1
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0
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1.4k
views
Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
6.8 years ago Bernd Fischer ▴ 550
50 results • Page 1 of 1
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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…
Comment: DMRcate design by James W. MacDonald 63k
That's what identical context means.
Votes
Comment: Speeding up of DelayedArray::write_block()
Answer: DelayedArray::read_sparse_block
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
Comment: NPARC package y-variable
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