Showing : Statistics • reset
2
votes
3
replies
1.4k
views
RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 7.5 years ago by 48k • written 7.5 years ago by • 0
19
votes
4
replies
7.6k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 7.6 years ago by • 0 • written 9.2 years ago by ▴ 40
0
votes
4
replies
5.4k
views
10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 7.5 years ago by 41k • written 7.5 years ago by • 0
0
votes
4
replies
2.6k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
7.9 years ago Titan • 0
8
votes
3
replies
2.9k
views
Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 7.6 years ago by 48k • written 7.6 years ago by • 0
3
votes
5
replies
1.2k
views
P adjusted values in Deseq2
DESeq2 Statistics
written 2.9 years ago by • 0
1
vote
2
replies
1.9k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 6.7 years ago by • 0 • written 8.7 years ago by ▴ 80
10
votes
14
replies
12k
views
how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 2.7 years ago by ▴ 20 • written 7.8 years ago by ▴ 30
0
votes
5
replies
1.1k
views
Comparing sets of differentially expressed genes
deseq2 rnaseq statistics
8.1 years ago sunkid • 0
0
votes
2
replies
1.2k
views
Compute test-score statistical significance using control-scores from shuffled population
statistics hypotheses R
7.7 years ago Bade ▴ 310
2
votes
1
reply
902
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 7.5 years ago by ★ 28k • written 7.5 years ago by • 0
2
votes
2
replies
7.1k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
7.0 years ago jol.espinoz ▴ 40
1
vote
2
replies
2.6k
views
the statistical test that DESeq2 use
deseq2 statistics
updated 6.8 years ago by 7.8k • written 6.8 years ago by • 0
2
votes
4
replies
1.1k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 70
25
votes
7
replies
9.5k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 8 weeks ago by ▴ 10 • written 6.1 years ago by ▴ 30
0
votes
2
replies
953
views
comparing two GOstats result lists
gostats statistics
updated 5.5 years ago by 64k • written 5.5 years ago by ▴ 20
1
vote
4
replies
1.1k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.3 years ago Andrea Carenzo • 0
1
vote
2
replies
822
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.2 years ago by 64k • written 5.2 years ago by • 0
8
votes
8
replies
6.0k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.2 years ago by 7.8k • written 5.2 years ago by ▴ 50
1
vote
6
replies
2.4k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 9 months ago by 41k • written 4.9 years ago by • 0
3
votes
3
replies
1.2k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.5 years ago by 41k • written 4.5 years ago by • 0
2
votes
2
replies
2.3k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.2 years ago by 48k • written 4.2 years ago by ▴ 10
0
votes
1
reply
640
views
Exclude interaction terms from the design
deseq2 statistics modelling
updated 4.1 years ago by 41k • written 4.1 years ago by • 0
0
votes
1
reply
629
views
How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
4.0 years ago A • 0
1
vote
2
replies
856
views
Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.1 years ago by 41k • written 3.1 years ago by ▴ 50
1
vote
1
reply
192
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 9 weeks ago by 64k • written 9 weeks ago by ▴ 10
0
votes
2
replies
527
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 11 months ago by ★ 1.3k • written 11 months ago by • 0
0
votes
6
replies
1.0k
views
regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
18 months ago Jitendra ▴ 10
1
vote
1
reply
697
views
FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 7 months ago by ★ 3.6k • written 7 months ago by • 0
0
votes
1
reply
93
views
DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 1 day ago by 41k • written 4 days ago by • 0
1
vote
0
replies
1.0k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
5.6 years ago Fred Hutch (Recruiting) ▴ 40
1
vote
0
replies
1.7k
views
News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics workshop news News
9.2 years ago gagneur ▴ 10
0
votes
0
replies
1.7k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
5.4 years ago • updated 3.0 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
809
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
2.7 years ago m.jackson • 0
1
vote
0
replies
527
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
16 months ago Andy Lynch ▴ 120
1
vote
0
replies
567
views
Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
16 months ago Andy Lynch ▴ 120
1
vote
2
replies
825
views
Newbie to all of this
bioconductor statistics
5.1 years ago sportwoo • 0
0
votes
0
replies
799
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
2.7 years ago • updated 2.6 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
639
views
package for mismatch distribution?
genetics statistics
4.9 years ago myriam.croze07 • 0
0
votes
1
reply
831
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.8 years ago naglemi ▴ 10
0
votes
0
replies
1.2k
views
Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
4.8 years ago • updated 4.0 years ago Luo Weijun ★ 1.6k
0
votes
3
replies
1.3k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 21 months ago by 21k • written 22 months ago by ▴ 10
0
votes
0
replies
847
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.3 years ago tatabox • 0
0
votes
2
replies
841
views
News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.1 years ago • updated 10 months ago Wolfgang Huber 13k
0
votes
3
replies
662
views
batch effect in EPIC array data
statistics Epigenetics R
updated 9 months ago by ▴ 720 • written 9 months ago by ▴ 10
3
votes
0
replies
2.0k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.1 years ago • updated 3.9 years ago Gordon Smyth 48k
0
votes
0
replies
459
views
Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
10 months ago alena.vanboemmel • 0
1
vote
0
replies
699
views
Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.5 years ago Fred Hutch (Recruiting) ▴ 40
0
votes
0
replies
1.5k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
7.8 years ago Hui Sun Leong ▴ 10
0
votes
0
replies
640
views
Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.3 years ago • updated 3.1 years ago whduke • 0
50 results • Page 1 of 1
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Comment: Ensembl down??? by bas_work ▴ 20
I want to link 'external_gene_names' (mouse, multiple lists) with the ensembl gene IDs and HGNC symbols of human orthologues using getLDS()…
Answer: SingleR Book Not Found by Peter Hickey ▴ 650
It's not gone, but it also hasn't successfully built since the most recent Bioconductor release ([https://bioconductor.org/checkResults/rel…
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by James W. MacDonald 64k
The arguments for that function can be found in the help page (accessed using `?DESeqDataSetFromTximport`) ``` Usage: DESeqDataSet(s…
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default by Michael Love 41k
argument txi is missing, with no default This means the function was expecting a named argument txi Check the man page for the funct…
Comment: Problem loading HDF5Array in R 4.3.2 by Sarah • 0
Thank you so much! This worked! It installed from source with no problem and after restarting my R session, everything loads properly now.…
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Answer: gseGO input list
Comment: Problem loading HDF5Array in R 4.3.2
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Answer: tximport: Error in is(txi, "list") : argument "txi" is missing, with no default
Comment: Ensembl down???
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