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Statistics
•
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0
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121
views
Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
5 weeks ago
Andy Lynch
▴ 120
0
votes
0
replies
182
views
multipollutant models
statistics
Regression
r
limma
4 months ago
Jitendra
▴ 10
0
votes
1
reply
284
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 4 months ago by
Michael Love
41k • written 4 months ago by
lionel.spinelli
• 0
1
vote
1
reply
312
views
Further analysis after limma regression output
statistics
Epigenetics
limma
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Jitendra
▴ 10
1
vote
1
reply
1.2k
views
FPKM t-test vs DEseq2
DESeq2
statistics
rna-seq
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
SH
• 0
0
votes
3
replies
870
views
batch effect in EPIC array data
statistics
Epigenetics
R
updated 13 months ago by
Lluís Revilla Sancho
▴ 730 • written 13 months ago by
Jitendra
▴ 10
0
votes
0
replies
614
views
Job:
PhD position in Bioinformatics in Jena
Statistics
ComputationalBiology
Aging
MachineLearning
14 months ago
alena.vanboemmel
• 0
0
votes
2
replies
649
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize
statistics
DESeq2
updated 15 months ago by
swbarnes2
★ 1.3k • written 15 months ago by
N
• 0
1
vote
0
replies
591
views
Statistical test for genomic annotation by ChIPseeker
statistics
PeakAnnotation
ChIPseeker
GuangchuangYu
19 months ago
arisarkar88
▴ 40
1
vote
0
replies
732
views
Job:
Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational
teaching
statistics
research
20 months ago
Andy Lynch
▴ 120
1
vote
0
replies
704
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
20 months ago
Andy Lynch
▴ 120
0
votes
6
replies
1.2k
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
22 months ago
Jitendra
▴ 10
0
votes
3
replies
1.4k
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 2.1 years ago by
Sean Davis
21k • written 2.2 years ago by
Jitendra
▴ 10
0
votes
2
replies
972
views
News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
modeling
statistics
ascona
Workshop
2.4 years ago • updated 14 months ago
Wolfgang Huber
★ 13k
0
votes
0
replies
883
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq
pathview
statistics
R
3.0 years ago • updated 2.9 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
913
views
Job:
Bioinformatician at MiroBio, Oxford, UK
Transcriptomics
Bioconductor
Statistics
Job
Biocon
3.1 years ago
m.jackson
• 0
3
votes
5
replies
1.3k
views
P adjusted values in Deseq2
DESeq2
Statistics
written 3.2 years ago by
Jesus
• 0
0
votes
0
replies
849
views
Job:
Scientist/Senior Scientist, Statistical Geneticist
Sequencing
Genetics
GeneticsPed
statistics
3.2 years ago
António Miguel de Jesus Domingues
▴ 490
0
votes
0
replies
1.0k
views
Job:
Proteomics Bioinformatician
JobPosting
Proteomics
Statistics
Job
3.3 years ago
Laura
• 0
0
votes
0
replies
880
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R
statistics
pathview
singlecellRNA-Seq
3.3 years ago • updated 3.0 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
1.0k
views
Re-calculation of Padj (P adjusted value)
statistics
Benjamini–Hochberg procedure
deseq2
updated 3.5 years ago by
Michael Love
41k • written 3.5 years ago by
Matan G.
▴ 50
2
votes
0
replies
822
views
Job:
Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology
statistics
bioinformatics
Job
3.5 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
734
views
Job:
Two Bioinformatics Fellowship Positions at US EPA
bioinformatics
toxicology
Job
sequenicng
statistics
3.7 years ago • updated 3.4 years ago
whduke
• 0
1
vote
0
replies
844
views
Job:
Post-Doctoral Research Fellow, Cancer Genomics
genomics
seattle
bioinformatics
data science
statistics
Job
3.8 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
1
reply
732
views
How to handle batch effect and interaction with experimental variables
deseq2
statistics
differential expression
4.4 years ago
A
• 0
3
votes
0
replies
2.1k
views
Job:
Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job
proteomics
Job
statistics
4.4 years ago • updated 4.2 years ago
Gordon Smyth
50k
0
votes
1
reply
731
views
Exclude interaction terms from the design
deseq2
statistics
modelling
updated 4.4 years ago by
Michael Love
41k • written 4.4 years ago by
polyptwo
• 0
2
votes
2
replies
2.7k
views
How adjusted p-values are calculated in limma
limma
r
transcriptomics
FDR
statistics
updated 4.5 years ago by
Gordon Smyth
50k • written 4.5 years ago by
Wuschel
▴ 10
0
votes
0
replies
967
views
Proteomics data analysis with DEP no replicates
DEP
Proteomics
Statistics
limma
4.6 years ago
tatabox
• 0
3
votes
3
replies
1.4k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2
apeglm
statistics
updated 4.8 years ago by
Michael Love
41k • written 4.8 years ago by
zefrieira
• 0
0
votes
0
replies
1.3k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
NGS
R
statistics
genomics
big data
Job
5.1 years ago • updated 4.3 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
927
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
5.1 years ago
naglemi
▴ 10
0
votes
0
replies
731
views
package for mismatch distribution?
genetics
statistics
5.2 years ago
myriam.croze07
• 0
1
vote
6
replies
2.6k
views
DESeq2 unbalanced sample size
deseq2
bioconductor
bioinformatics
statistics
updated 13 months ago by
Michael Love
41k • written 5.3 years ago by
casikecola
• 0
1
vote
2
replies
907
views
Newbie to all of this
bioconductor
statistics
5.4 years ago
sportwoo
• 0
8
votes
8
replies
6.6k
views
Voom transformation from counts and normalization to negative values
rnaseq
voom
limma
tcga
statistics
updated 5.5 years ago by
Ryan C. Thompson
★ 7.9k • written 5.5 years ago by
Beginner
▴ 60
1
vote
2
replies
930
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays
microarray
probe
statistics
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
ravelarvargas
• 0
1
vote
4
replies
1.2k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
5.6 years ago
Andrea Carenzo
• 0
0
votes
0
replies
1.8k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
5.7 years ago • updated 3.3 years ago
Luo Weijun
★ 1.6k
0
votes
2
replies
1.1k
views
comparing two GOstats result lists
gostats
statistics
updated 5.8 years ago by
James W. MacDonald
65k • written 5.8 years ago by
sven.schenk
▴ 20
1
vote
0
replies
1.1k
views
Job:
Statistical Research Associate
biostatistics
statistics
sas
git
assay
Job
5.9 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
1.1k
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
6.0 years ago
floriandeckert
▴ 30
0
votes
0
replies
1.1k
views
News:
SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell
cancer genomics
statistics
News
6.0 years ago
kieranrcampbell
▴ 50
0
votes
0
replies
1.1k
views
Two questions about pathifier package
pathways
statistics
microarray
6.2 years ago
arronar
• 0
25
votes
7
replies
10k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 5 months ago by
camillab.
▴ 10 • written 6.5 years ago by
Russ Fraser
▴ 30
2
votes
4
replies
1.2k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 6.5 years ago by
Steve Lianoglou
★ 13k • written 6.5 years ago by
David R
▴ 90
0
votes
0
replies
1.1k
views
Assigning stats to differential peak locations relative to TSS
chipseeker
chipseq
statistics
6.5 years ago
rbronste
▴ 60
0
votes
0
replies
1.2k
views
Job:
Bioinformaticist, Research Programmer
R
genomics
statistics
Job
7.1 years ago
radel
• 0
0
votes
0
replies
1.5k
views
Job:
Research Scientist in Biostatistics/Bioinformatics
statistics
genetics
genomics
R
Job
7.1 years ago • updated 7.0 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
2.7k
views
the statistical test that DESeq2 use
deseq2
statistics
updated 7.1 years ago by
Ryan C. Thompson
★ 7.9k • written 7.1 years ago by
elhamdallalbashi
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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