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Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
4 weeks ago
Andy Lynch
▴ 120
0
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0
replies
182
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multipollutant models
statistics
Regression
r
limma
4 months ago
Jitendra
▴ 10
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1
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284
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DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 4 months ago by
Michael Love
41k • written 4 months ago by
lionel.spinelli
• 0
1
vote
1
reply
312
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Further analysis after limma regression output
statistics
Epigenetics
limma
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Jitendra
▴ 10
1
vote
1
reply
1.2k
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FPKM t-test vs DEseq2
DESeq2
statistics
rna-seq
updated 11 months ago by
ATpoint
★ 4.0k • written 11 months ago by
SH
• 0
25
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7
replies
10k
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Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 5 months ago by
camillab.
▴ 10 • written 6.5 years ago by
Russ Fraser
▴ 30
6 results • Page
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Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Comment: DEG Filtering
by
Gordon Smyth
50k
I already know that you using CEL files because you need them to perform RMA normalization. Yes, you should follow the advice I have alread…
Votes
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
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