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Job: Statistics Lectureships at St Andrews
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multipollutant models
statistics Regression r limma
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DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 4 months ago by 41k • written 4 months ago by • 0
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 6 months ago by ▴ 10 • written 6.5 years ago by ▴ 30
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Further analysis after limma regression output
statistics Epigenetics limma
updated 6 months ago by 65k • written 6 months ago by ▴ 10
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 12 months ago by ★ 4.0k • written 12 months ago by • 0
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 13 months ago by 41k • written 5.3 years ago by • 0
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batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.5 years ago • updated 14 months ago Wolfgang Huber ★ 13k
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
20 months ago arisarkar88 ▴ 40
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
21 months ago Andy Lynch ▴ 120
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
21 months ago Andy Lynch ▴ 120
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
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P adjusted values in Deseq2
DESeq2 Statistics
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
3.1 years ago • updated 3.0 years ago Luo Weijun ★ 1.6k
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
3.4 years ago • updated 3.1 years ago Luo Weijun ★ 1.6k
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how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 3.1 years ago by ▴ 20 • written 8.2 years ago by ▴ 30
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Transcriptomics Bioconductor Statistics Job Biocon
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Sequencing Genetics GeneticsPed statistics
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
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5.8 years ago • updated 3.4 years ago Luo Weijun ★ 1.6k
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bioinformatics toxicology Job sequenicng statistics
3.7 years ago • updated 3.4 years ago whduke • 0
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.5 years ago by 41k • written 3.5 years ago by ▴ 60
2
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840
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
3.6 years ago Johannes Rainer ★ 2.0k
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.9 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.5 years ago • updated 4.3 years ago Gordon Smyth 50k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
5.2 years ago • updated 4.4 years ago Luo Weijun ★ 1.6k
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759
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
4.4 years ago A • 0
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752
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 4.5 years ago by 41k • written 4.5 years ago by • 0
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.6 years ago by 50k • written 4.6 years ago by ▴ 10
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.7 years ago tatabox • 0
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3
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1.4k
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.9 years ago by 41k • written 4.9 years ago by • 0
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960
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
5.2 years ago naglemi ▴ 10
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749
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package for mismatch distribution?
genetics statistics
5.2 years ago myriam.croze07 • 0
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926
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Newbie to all of this
bioconductor statistics
5.5 years ago sportwoo • 0
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6.7k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.6 years ago by ★ 7.9k • written 5.6 years ago by ▴ 60
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.7 years ago Andrea Carenzo • 0
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1.1k
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comparing two GOstats result lists
gostats statistics
updated 5.9 years ago by 65k • written 5.9 years ago by ▴ 20
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1.2k
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
6.0 years ago Fred Hutch (Recruiting) ▴ 40
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
6.0 years ago floriandeckert ▴ 30
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
6.1 years ago kieranrcampbell ▴ 50
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1.2k
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Two questions about pathifier package
pathways statistics microarray
6.3 years ago arronar • 0
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4
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1.2k
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.5 years ago by ★ 13k • written 6.5 years ago by ▴ 90
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
6.6 years ago rbronste ▴ 60
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1.5k
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
7.2 years ago • updated 7.0 years ago Luo Weijun ★ 1.6k
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2
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2.0k
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how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 7.1 years ago by • 0 • written 9.1 years ago by ▴ 80
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Comment: DESeq2 setting significant p-value by Michael Love 41k
It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.
Comment: Input Question for deseq.r by ATpoint ★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
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Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
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