Showing : Statistics • reset
25
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7
replies
9.5k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 8 weeks ago by ▴ 10 • written 6.1 years ago by ▴ 30
19
votes
4
replies
7.6k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 7.7 years ago by • 0 • written 9.2 years ago by ▴ 40
10
votes
14
replies
12k
views
how DESeq calculates p-value ?
deseq differential gene expression statistics p-value
updated 2.7 years ago by ▴ 20 • written 7.8 years ago by ▴ 30
8
votes
3
replies
2.9k
views
Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 7.6 years ago by 48k • written 7.6 years ago by • 0
8
votes
8
replies
6.0k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 5.2 years ago by 7.8k • written 5.2 years ago by ▴ 50
3
votes
5
replies
1.2k
views
P adjusted values in Deseq2
DESeq2 Statistics
written 2.9 years ago by • 0
3
votes
0
replies
2.0k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
4.1 years ago • updated 3.9 years ago Gordon Smyth 48k
3
votes
3
replies
1.2k
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.5 years ago by 41k • written 4.5 years ago by • 0
2
votes
2
replies
2.3k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 4.2 years ago by 48k • written 4.2 years ago by ▴ 10
2
votes
1
reply
905
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 7.5 years ago by ★ 28k • written 7.5 years ago by • 0
2
votes
3
replies
1.4k
views
RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 7.5 years ago by 48k • written 7.5 years ago by • 0
2
votes
2
replies
7.1k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
7.0 years ago jol.espinoz ▴ 40
2
votes
4
replies
1.1k
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 6.2 years ago by 13k • written 6.2 years ago by ▴ 70
2
votes
0
replies
732
views
Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
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3.2 years ago Johannes Rainer ★ 2.0k
1
vote
0
replies
1.9k
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Job: Postdoctoral Research Fellow in Bioinformatics - Institute of Medical Biostatistics, Epidemiology and Informatics (IMBEI), Mainz, Germany
bioinformatician job rnaseq statistics systemsbiology Job
8.6 years ago Federico Marini ▴ 150
1
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0
replies
1.7k
views
News: Workshop Statistical Methods for Post Genomic Data in Munich, February 12-13, 2015
statistics workshop news News
9.2 years ago gagneur ▴ 10
1
vote
4
replies
1.1k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
5.3 years ago Andrea Carenzo • 0
1
vote
1
reply
193
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 10 weeks ago by 64k • written 10 weeks ago by ▴ 10
1
vote
2
replies
1.9k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 6.7 years ago by • 0 • written 8.7 years ago by ▴ 80
1
vote
2
replies
823
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 5.3 years ago by 64k • written 5.3 years ago by • 0
1
vote
2
replies
2.6k
views
the statistical test that DESeq2 use
deseq2 statistics
updated 6.8 years ago by 7.8k • written 6.8 years ago by • 0
1
vote
2
replies
827
views
Newbie to all of this
bioconductor statistics
5.1 years ago sportwoo • 0
1
vote
0
replies
700
views
Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.5 years ago Fred Hutch (Recruiting) ▴ 40
1
vote
0
replies
570
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
16 months ago Andy Lynch ▴ 120
1
vote
6
replies
2.4k
views
DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 9 months ago by 41k • written 5.0 years ago by • 0
1
vote
0
replies
469
views
Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
15 months ago arisarkar88 ▴ 40
1
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0
replies
1.0k
views
Job: Statistical Research Associate
biostatistics statistics sas git assay Job
5.6 years ago Fred Hutch (Recruiting) ▴ 40
1
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2
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864
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 50
1
vote
0
replies
1.5k
views
Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
7.0 years ago Bernd Fischer ▴ 550
1
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1
reply
707
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 7 months ago by ★ 3.6k • written 7 months ago by • 0
1
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0
replies
529
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
16 months ago Andy Lynch ▴ 120
0
votes
1
reply
836
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.8 years ago naglemi ▴ 10
0
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0
replies
1.2k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
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4.8 years ago • updated 4.0 years ago Luo Weijun ★ 1.6k
0
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0
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851
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
4.3 years ago tatabox • 0
0
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1
reply
642
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 4.1 years ago by 41k • written 4.1 years ago by • 0
0
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0
replies
1.9k
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Job: Full position as Statistician at ETH Zurich in Personalized Medicine Consultancy/Data Analysis
statistics consultancy personalized medicine Job
9.1 years ago Daniel Stekhoven ▴ 10
0
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1
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632
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
4.1 years ago A • 0
0
votes
0
replies
642
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
3.3 years ago • updated 3.1 years ago whduke • 0
0
votes
1
reply
113
views
DEseq2 : Complex design with a mixture of male and female mice
statistics DESeq2
updated 3 days ago by 41k • written 7 days ago by • 0
0
votes
0
replies
783
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
3.0 years ago • updated 2.7 years ago Luo Weijun ★ 1.6k
0
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0
replies
917
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
2.9 years ago Laura • 0
0
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0
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747
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Job: Scientist/Senior Scientist, Statistical Geneticist
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2.9 years ago António Miguel de Jesus Domingues ▴ 490
0
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Job: Bioinformatician at MiroBio, Oxford, UK
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2.7 years ago m.jackson • 0
0
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0
replies
38
views
multipollutant models
statistics Regression r limma
2 days ago Jitendra ▴ 10
0
votes
2
replies
529
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 11 months ago by ★ 1.3k • written 11 months ago by • 0
0
votes
0
replies
800
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
2.7 years ago • updated 2.6 years ago Luo Weijun ★ 1.6k
0
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3
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1.3k
views
Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 21 months ago by 21k • written 22 months ago by ▴ 10
0
votes
2
replies
846
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
2.1 years ago • updated 10 months ago Wolfgang Huber 13k
0
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0
replies
461
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
10 months ago alena.vanboemmel • 0
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0
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Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
7.8 years ago Hui Sun Leong ▴ 10
50 results • Page 1 of 1
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Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Mike Smith ★ 6.2k
If we hover over the tiny little red icon next to the Linux build report, we can see that the source package isn't being distributed becaus…
Comment: ClusterProfiler - enrichKEGG on specific pathways by EvaLan • 0
Hey bekah, I wonder if you have found the solution to solve this issue? Best wishes, EvaLan
Comment: Why is DMRcate not available for Bioconductor version 3.18? by Gordon Smyth 48k
That's a good question. On the DMRcate landing page, one can see that the "Source package" file is missing, meaning that installation in Un…
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Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
Answer: trying to add SingleR label to Seurat Object fails
Comment: DESeq2 - groups with biological replicates from the same patient
Answer: EdgeR: Exact test and glmQLFTest produce very different results
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