Biostar Synergy

Showing : Synergy • reset

1

vote

5

replies

452

views

deseq2 contrast synergy

updated 3.0 years ago by Michael Love 37k • written 3.0 years ago by steven wink ▴ 90

0

votes

2

replies

200

views

conditions design DESeq2 Synergy

updated 5 months ago by Michael Love 37k • written 5 months ago by johannesdolberg • 0

0

votes

1

reply

238

views

synergy DESeq2 RNA-seq contrast

10 months ago • updated 9 months ago slcno • 0

3 results • Page 1 of 1

Recent ...

Replies

Comment: Italicise by Kevin Blighe 3.5k

Okay, I am guessing that the problem is that you need to update the version of *EnhancedVolcano* to the latest version. Can you try that? T…

Comment: Italicise by Pau • 0

They're the same: example of the vignette: "italic('VCAM1')" and result from my data: "italic('CARS1')" As I am running against time be…

Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Votes

Awards • All

Scholar to Nicole • 0

Teacher to Michael Love 37k