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TCGABiolinks
•
reset
4
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8
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1.1k
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TCGAbiolinks cannot find bcr_patient_barcode
TCGAbiolinks
10 months ago • updated 9 months ago
Habil Zare
▴ 200
1
vote
0
replies
111
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k
MethylationArray
TCGAbiolinks
Tcga
TCGAbiolinksGUI.data
4 weeks ago
BioinfoMug
• 0
1
vote
3
replies
2.9k
views
maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error
maftools
tcgabiolinks
updated 9 days ago by
snijesh
▴ 20 • written 6.5 years ago by
Ramiro Magno
▴ 100
0
votes
0
replies
109
views
GDC slides download
TCGAbiolinks
5 weeks ago
jain72744
• 0
0
votes
4
replies
221
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks
Survival
updated 6 weeks ago by
Lluís Revilla Sancho
▴ 730 • written 6 weeks ago by
tirordep
• 0
0
votes
1
reply
165
views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks
TCGA
clinical
TCGA-BRCA
written 16 days ago by
BioinfoMug
• 0
0
votes
1
reply
340
views
Problems when running GDC_prepare in R
TCGAbiolinks
error
GDC_prepare
5 months ago
leon
• 0
0
votes
2
replies
794
views
RPPA data (Proteomics analysis)
TCGAbiolinks
limma
12 months ago • updated 11 months ago
qiz218591
• 0
0
votes
1
reply
565
views
How to identify the batch informations from the sample ID?
TCGAbiolinks
BatchQC
BatchEffect
updated 7 months ago by
wrab425
• 0 • written 12 months ago by
snijesh
▴ 20
0
votes
0
replies
230
views
Where/how are TCGAbiolinks colData column names sourced from?
clinical
TCGAbiolinks
8 months ago
BioInfoBeginnerrr
• 0
0
votes
0
replies
110
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray
normalize450K
TCGAbiolinks
Normalization
MethylationArrayData
23 days ago • updated 9 days ago
Giovanni Calice
▴ 160
0
votes
0
replies
110
views
champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks
ChAMP
8 weeks ago
Thalita
• 0
0
votes
4
replies
926
views
GDCdownload Directory Problem :(
TCGAWorkflowData
TCGAbiolinks
updated 5 weeks ago by
Marcel Ramos
690 • written 23 months ago by
Emre
• 0
13 results • Page
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Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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